Sourcing python-remove-tests-dir-hook Sourcing python-catch-conflicts-hook.sh Sourcing python-remove-bin-bytecode-hook.sh Sourcing pip-build-hook Using pipBuildPhase Using pipShellHook Sourcing pip-install-hook Using pipInstallPhase Sourcing python-imports-check-hook.sh Using pythonImportsCheckPhase Sourcing python-namespaces-hook Sourcing pytest-check-hook Using pytestCheckPhase @nix { "action": "setPhase", "phase": "unpackPhase" } unpacking sources unpacking source archive /nix/store/qlrcplbgljny6am1vp44b0p92cylp84z-spectral-cube-0.5.0.tar.gz source root is spectral-cube-0.5.0 setting SOURCE_DATE_EPOCH to timestamp 1600375078 of file spectral-cube-0.5.0/spectral_cube/version.py @nix { "action": "setPhase", "phase": "patchPhase" } patching sources applying patch /nix/store/rbs8svbhdw3idgha8pym2i5s0fiy0kc4-bbe4295ebef7dfa6fe4474275a29acd6cb0cb544.patch patching file spectral_cube/tests/test_spectral_cube.py Hunk #2 succeeded at 1951 (offset -9 lines). @nix { "action": "setPhase", "phase": "configurePhase" } configuring no configure script, doing nothing @nix { "action": "setPhase", "phase": "buildPhase" } building Executing pipBuildPhase Creating a wheel... WARNING: The directory '/homeless-shelter/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. Ignoring indexes: https://pypi.org/simple Created temporary directory: /build/pip-ephem-wheel-cache-skg26gwe Created temporary directory: /build/pip-req-tracker-irryx9n3 Initialized build tracking at /build/pip-req-tracker-irryx9n3 Created build tracker: /build/pip-req-tracker-irryx9n3 Entered build tracker: /build/pip-req-tracker-irryx9n3 Created temporary directory: /build/pip-wheel-d7ajjzao Processing /build/spectral-cube-0.5.0 Created temporary directory: /build/pip-req-build-_s47gzrl  DEPRECATION: A future pip version will change local packages to be built in-place without first copying to a temporary directory. We recommend you use --use-feature=in-tree-build to test your packages with this new behavior before it becomes the default. pip 21.3 will remove support for this functionality. You can find discussion regarding this at https://github.com/pypa/pip/issues/7555. Added file:///build/spectral-cube-0.5.0 to build tracker '/build/pip-req-tracker-irryx9n3' Created temporary directory: /build/pip-modern-metadata-vpx1ehe3 Running command /nix/store/7ssj1jid9dqikk513rvg340kpbxrv0p0-python3-3.8.11/bin/python3.8 /nix/store/k1id2ixqxvq0gr6dqcaddjcx4dpnqxqs-python3.8-pip-21.1.3/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /build/tmpjkgq7a_4 running dist_info creating /build/pip-modern-metadata-vpx1ehe3/spectral_cube.egg-info writing /build/pip-modern-metadata-vpx1ehe3/spectral_cube.egg-info/PKG-INFO writing dependency_links to /build/pip-modern-metadata-vpx1ehe3/spectral_cube.egg-info/dependency_links.txt writing requirements to /build/pip-modern-metadata-vpx1ehe3/spectral_cube.egg-info/requires.txt writing top-level names to /build/pip-modern-metadata-vpx1ehe3/spectral_cube.egg-info/top_level.txt writing manifest file '/build/pip-modern-metadata-vpx1ehe3/spectral_cube.egg-info/SOURCES.txt' reading manifest file '/build/pip-modern-metadata-vpx1ehe3/spectral_cube.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' /nix/store/7ssj1jid9dqikk513rvg340kpbxrv0p0-python3-3.8.11/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'use_scm_version' warnings.warn(msg) /nix/store/35rsqwasg2sjpis2hpbfg2zqpmibclmy-python3.8-setuptools-57.2.0/lib/python3.8/site-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead warnings.warn( /nix/store/35rsqwasg2sjpis2hpbfg2zqpmibclmy-python3.8-setuptools-57.2.0/lib/python3.8/site-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'show-response' will not be supported in future versions. Please use the underscore name 'show_response' instead warnings.warn( warning: no files found matching 'README.md' warning: no files found matching '*.c' under directory '*.pyx' warning: no files found matching '*.pxd' under directory '*.pyx' warning: no files found matching '*' under directory 'licenses' warning: no files found matching '*' under directory 'cextern' warning: no files found matching '*' under directory 'scripts' no previously-included directories found matching 'build' no previously-included directories found matching 'docs/_build' no previously-included directories found matching 'docs/api' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.o' found anywhere in distribution adding license file 'LICENSE.rst' writing manifest file '/build/pip-modern-metadata-vpx1ehe3/spectral_cube.egg-info/SOURCES.txt' creating '/build/pip-modern-metadata-vpx1ehe3/spectral_cube.dist-info' adding license file "LICENSE.rst" (matched pattern "LICEN[CS]E*") Preparing wheel metadata ... [?25l[?25hdone Source in /build/pip-req-build-_s47gzrl has version 0.0.0, which satisfies requirement spectral-cube==0.0.0 from file:///build/spectral-cube-0.5.0 Removed spectral-cube==0.0.0 from file:///build/spectral-cube-0.5.0 from build tracker '/build/pip-req-tracker-irryx9n3' Created temporary directory: /build/pip-unpack-y_hwum6t Building wheels for collected packages: spectral-cube Created temporary directory: /build/pip-wheel-bm6ylcx2 Destination directory: /build/pip-wheel-bm6ylcx2 Running command /nix/store/7ssj1jid9dqikk513rvg340kpbxrv0p0-python3-3.8.11/bin/python3.8 /nix/store/k1id2ixqxvq0gr6dqcaddjcx4dpnqxqs-python3.8-pip-21.1.3/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /build/tmpph4rtgjc running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/spectral_cube copying spectral_cube/conftest.py -> build/lib/spectral_cube copying spectral_cube/version.py -> build/lib/spectral_cube copying spectral_cube/analysis_utilities.py -> build/lib/spectral_cube copying spectral_cube/visualization-tools.py -> build/lib/spectral_cube copying spectral_cube/__init__.py -> build/lib/spectral_cube copying spectral_cube/_astropy_init.py -> build/lib/spectral_cube copying spectral_cube/_moments.py -> build/lib/spectral_cube copying spectral_cube/utils.py -> build/lib/spectral_cube copying spectral_cube/base_class.py -> build/lib/spectral_cube copying spectral_cube/spectral_cube.py -> build/lib/spectral_cube copying spectral_cube/lower_dimensional_structures.py -> build/lib/spectral_cube copying spectral_cube/ytcube.py -> build/lib/spectral_cube copying spectral_cube/stokes_spectral_cube.py -> build/lib/spectral_cube copying spectral_cube/wcs_utils.py -> build/lib/spectral_cube copying spectral_cube/spectral_axis.py -> build/lib/spectral_cube copying spectral_cube/cube_utils.py -> build/lib/spectral_cube copying spectral_cube/dask_spectral_cube.py -> build/lib/spectral_cube copying spectral_cube/masks.py -> build/lib/spectral_cube copying spectral_cube/np_compat.py -> build/lib/spectral_cube creating build/lib/spectral_cube/io copying spectral_cube/io/core.py -> build/lib/spectral_cube/io copying spectral_cube/io/casa_low_level_io.py -> build/lib/spectral_cube/io copying spectral_cube/io/class_lmv.py -> build/lib/spectral_cube/io copying spectral_cube/io/casa_image.py -> build/lib/spectral_cube/io copying spectral_cube/io/casa_masks.py -> build/lib/spectral_cube/io copying spectral_cube/io/__init__.py -> build/lib/spectral_cube/io copying spectral_cube/io/fits.py -> build/lib/spectral_cube/io copying spectral_cube/io/casa_dask.py -> build/lib/spectral_cube/io copying spectral_cube/io/casa_wcs.py -> build/lib/spectral_cube/io creating build/lib/spectral_cube/tests copying spectral_cube/tests/helpers.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_spectral_cube.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/setup_package.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_cube_utils.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_casafuncs.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_visualization.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_moments.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/__init__.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_analysis_functions.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_spectral_axis.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/utilities.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_projection.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_dask.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_masks.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_regrid.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_performance.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_wcs_utils.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_subcubes.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_io.py -> build/lib/spectral_cube/tests copying spectral_cube/tests/test_stokes_spectral_cube.py -> build/lib/spectral_cube/tests creating build/lib/spectral_cube/io/tests copying spectral_cube/io/tests/test_casa_dask.py -> build/lib/spectral_cube/io/tests copying spectral_cube/io/tests/test_casa_wcs.py -> build/lib/spectral_cube/io/tests copying spectral_cube/io/tests/__init__.py -> build/lib/spectral_cube/io/tests copying spectral_cube/io/tests/test_casa_low_level_io.py -> build/lib/spectral_cube/io/tests creating build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/__init__.py -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/cubewcs1.hdr -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/partial_overlap_fk5.reg -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/example_cube.lmv -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/header_jybeam.hdr -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/no_overlap_image.reg -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/Makefile -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/fk5_twoboxes.reg -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/partial_overlap_image.reg -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/255-pixel.reg -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/255-fk5.reg -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/greisen2006.hdr -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/example_cube.fits -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/no_overlap_fk5.reg -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/fk5.reg -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/cubewcs2.hdr -> build/lib/spectral_cube/tests/data copying spectral_cube/tests/data/image.reg -> build/lib/spectral_cube/tests/data creating build/lib/spectral_cube/io/tests/data creating build/lib/spectral_cube/io/tests/data/gt32bit.image copying spectral_cube/io/tests/data/gt32bit.image/table.f0 -> build/lib/spectral_cube/io/tests/data/gt32bit.image creating build/lib/spectral_cube/io/tests/data/floatarray.image copying spectral_cube/io/tests/data/floatarray.image/table.dat -> build/lib/spectral_cube/io/tests/data/floatarray.image creating build/lib/spectral_cube/io/tests/data/lt32bit.image copying spectral_cube/io/tests/data/lt32bit.image/table.f0 -> build/lib/spectral_cube/io/tests/data/lt32bit.image installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/conftest.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/version.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/analysis_utilities.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/visualization-tools.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/__init__.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/_astropy_init.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/_moments.py -> build/bdist.linux-x86_64/wheel/spectral_cube creating build/bdist.linux-x86_64/wheel/spectral_cube/io copying build/lib/spectral_cube/io/core.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io copying build/lib/spectral_cube/io/casa_low_level_io.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io copying build/lib/spectral_cube/io/class_lmv.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io copying build/lib/spectral_cube/io/casa_image.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io copying build/lib/spectral_cube/io/casa_masks.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io copying build/lib/spectral_cube/io/__init__.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io copying build/lib/spectral_cube/io/fits.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io copying build/lib/spectral_cube/io/casa_dask.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io copying build/lib/spectral_cube/io/casa_wcs.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io creating build/bdist.linux-x86_64/wheel/spectral_cube/io/tests copying build/lib/spectral_cube/io/tests/test_casa_dask.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io/tests copying build/lib/spectral_cube/io/tests/test_casa_wcs.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io/tests copying build/lib/spectral_cube/io/tests/__init__.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io/tests copying build/lib/spectral_cube/io/tests/test_casa_low_level_io.py -> build/bdist.linux-x86_64/wheel/spectral_cube/io/tests creating build/bdist.linux-x86_64/wheel/spectral_cube/io/tests/data creating build/bdist.linux-x86_64/wheel/spectral_cube/io/tests/data/gt32bit.image copying build/lib/spectral_cube/io/tests/data/gt32bit.image/table.f0 -> build/bdist.linux-x86_64/wheel/spectral_cube/io/tests/data/gt32bit.image creating build/bdist.linux-x86_64/wheel/spectral_cube/io/tests/data/floatarray.image copying build/lib/spectral_cube/io/tests/data/floatarray.image/table.dat -> build/bdist.linux-x86_64/wheel/spectral_cube/io/tests/data/floatarray.image creating build/bdist.linux-x86_64/wheel/spectral_cube/io/tests/data/lt32bit.image copying build/lib/spectral_cube/io/tests/data/lt32bit.image/table.f0 -> build/bdist.linux-x86_64/wheel/spectral_cube/io/tests/data/lt32bit.image copying build/lib/spectral_cube/utils.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/base_class.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/spectral_cube.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/lower_dimensional_structures.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/ytcube.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/stokes_spectral_cube.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/wcs_utils.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/spectral_axis.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/cube_utils.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/dask_spectral_cube.py -> build/bdist.linux-x86_64/wheel/spectral_cube creating build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/helpers.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_spectral_cube.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/setup_package.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_cube_utils.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_casafuncs.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_visualization.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_moments.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/__init__.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_analysis_functions.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_spectral_axis.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/utilities.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_projection.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_dask.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_masks.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_regrid.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_performance.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_wcs_utils.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_subcubes.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/tests/test_io.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests creating build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/cubewcs1.hdr -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/partial_overlap_fk5.reg -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/example_cube.lmv -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/header_jybeam.hdr -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/no_overlap_image.reg -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/Makefile -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/fk5_twoboxes.reg -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/partial_overlap_image.reg -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/__init__.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/255-pixel.reg -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/255-fk5.reg -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/greisen2006.hdr -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/example_cube.fits -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/no_overlap_fk5.reg -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/fk5.reg -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/cubewcs2.hdr -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/data/image.reg -> build/bdist.linux-x86_64/wheel/spectral_cube/tests/data copying build/lib/spectral_cube/tests/test_stokes_spectral_cube.py -> build/bdist.linux-x86_64/wheel/spectral_cube/tests copying build/lib/spectral_cube/masks.py -> build/bdist.linux-x86_64/wheel/spectral_cube copying build/lib/spectral_cube/np_compat.py -> build/bdist.linux-x86_64/wheel/spectral_cube running install_egg_info running egg_info writing spectral_cube.egg-info/PKG-INFO writing dependency_links to spectral_cube.egg-info/dependency_links.txt writing requirements to spectral_cube.egg-info/requires.txt writing top-level names to spectral_cube.egg-info/top_level.txt reading manifest file 'spectral_cube.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' /nix/store/7ssj1jid9dqikk513rvg340kpbxrv0p0-python3-3.8.11/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'use_scm_version' warnings.warn(msg) /nix/store/35rsqwasg2sjpis2hpbfg2zqpmibclmy-python3.8-setuptools-57.2.0/lib/python3.8/site-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead warnings.warn( /nix/store/35rsqwasg2sjpis2hpbfg2zqpmibclmy-python3.8-setuptools-57.2.0/lib/python3.8/site-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'show-response' will not be supported in future versions. Please use the underscore name 'show_response' instead warnings.warn( warning: no files found matching 'README.md' warning: no files found matching '*.c' under directory '*.pyx' warning: no files found matching '*.pxd' under directory '*.pyx' warning: no files found matching '*' under directory 'licenses' warning: no files found matching '*' under directory 'cextern' warning: no files found matching '*' under directory 'scripts' no previously-included directories found matching 'build' no previously-included directories found matching 'docs/_build' no previously-included directories found matching 'docs/api' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.o' found anywhere in distribution adding license file 'LICENSE.rst' writing manifest file 'spectral_cube.egg-info/SOURCES.txt' Copying spectral_cube.egg-info to build/bdist.linux-x86_64/wheel/spectral_cube-0.0.0-py3.8.egg-info running install_scripts adding license file "LICENSE.rst" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-x86_64/wheel/spectral_cube-0.0.0.dist-info/WHEEL creating '/build/pip-wheel-bm6ylcx2/tmpeao3j9ck/spectral_cube-0.0.0-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'spectral_cube/__init__.py' adding 'spectral_cube/_astropy_init.py' adding 'spectral_cube/_moments.py' adding 'spectral_cube/analysis_utilities.py' adding 'spectral_cube/base_class.py' adding 'spectral_cube/conftest.py' adding 'spectral_cube/cube_utils.py' adding 'spectral_cube/dask_spectral_cube.py' adding 'spectral_cube/lower_dimensional_structures.py' adding 'spectral_cube/masks.py' adding 'spectral_cube/np_compat.py' adding 'spectral_cube/spectral_axis.py' adding 'spectral_cube/spectral_cube.py' adding 'spectral_cube/stokes_spectral_cube.py' adding 'spectral_cube/utils.py' adding 'spectral_cube/version.py' adding 'spectral_cube/visualization-tools.py' adding 'spectral_cube/wcs_utils.py' adding 'spectral_cube/ytcube.py' adding 'spectral_cube/io/__init__.py' adding 'spectral_cube/io/casa_dask.py' adding 'spectral_cube/io/casa_image.py' adding 'spectral_cube/io/casa_low_level_io.py' adding 'spectral_cube/io/casa_masks.py' adding 'spectral_cube/io/casa_wcs.py' adding 'spectral_cube/io/class_lmv.py' adding 'spectral_cube/io/core.py' adding 'spectral_cube/io/fits.py' adding 'spectral_cube/io/tests/__init__.py' adding 'spectral_cube/io/tests/test_casa_dask.py' adding 'spectral_cube/io/tests/test_casa_low_level_io.py' adding 'spectral_cube/io/tests/test_casa_wcs.py' adding 'spectral_cube/io/tests/data/floatarray.image/table.dat' adding 'spectral_cube/io/tests/data/gt32bit.image/table.f0' adding 'spectral_cube/io/tests/data/lt32bit.image/table.f0' adding 'spectral_cube/tests/__init__.py' adding 'spectral_cube/tests/helpers.py' adding 'spectral_cube/tests/setup_package.py' adding 'spectral_cube/tests/test_analysis_functions.py' adding 'spectral_cube/tests/test_casafuncs.py' adding 'spectral_cube/tests/test_cube_utils.py' adding 'spectral_cube/tests/test_dask.py' adding 'spectral_cube/tests/test_io.py' adding 'spectral_cube/tests/test_masks.py' adding 'spectral_cube/tests/test_moments.py' adding 'spectral_cube/tests/test_performance.py' adding 'spectral_cube/tests/test_projection.py' adding 'spectral_cube/tests/test_regrid.py' adding 'spectral_cube/tests/test_spectral_axis.py' adding 'spectral_cube/tests/test_spectral_cube.py' adding 'spectral_cube/tests/test_stokes_spectral_cube.py' adding 'spectral_cube/tests/test_subcubes.py' adding 'spectral_cube/tests/test_visualization.py' adding 'spectral_cube/tests/test_wcs_utils.py' adding 'spectral_cube/tests/utilities.py' adding 'spectral_cube/tests/data/255-fk5.reg' adding 'spectral_cube/tests/data/255-pixel.reg' adding 'spectral_cube/tests/data/Makefile' adding 'spectral_cube/tests/data/__init__.py' adding 'spectral_cube/tests/data/cubewcs1.hdr' adding 'spectral_cube/tests/data/cubewcs2.hdr' adding 'spectral_cube/tests/data/example_cube.fits' adding 'spectral_cube/tests/data/example_cube.lmv' adding 'spectral_cube/tests/data/fk5.reg' adding 'spectral_cube/tests/data/fk5_twoboxes.reg' adding 'spectral_cube/tests/data/greisen2006.hdr' adding 'spectral_cube/tests/data/header_jybeam.hdr' adding 'spectral_cube/tests/data/image.reg' adding 'spectral_cube/tests/data/no_overlap_fk5.reg' adding 'spectral_cube/tests/data/no_overlap_image.reg' adding 'spectral_cube/tests/data/partial_overlap_fk5.reg' adding 'spectral_cube/tests/data/partial_overlap_image.reg' adding 'spectral_cube-0.0.0.dist-info/LICENSE.rst' adding 'spectral_cube-0.0.0.dist-info/METADATA' adding 'spectral_cube-0.0.0.dist-info/WHEEL' adding 'spectral_cube-0.0.0.dist-info/top_level.txt' adding 'spectral_cube-0.0.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for spectral-cube (PEP 517) ... [?25l[?25hdone Created wheel for spectral-cube: filename=spectral_cube-0.0.0-py3-none-any.whl size=216048 sha256=165cd19eb91e77e68a3344551341f10e72840ef242158a514803f751e8fabfd6 Stored in directory: /build/pip-ephem-wheel-cache-skg26gwe/wheels/9d/3a/c3/4700f23a6d49d0f986e0bfe9473e9cceae908ffaef9f10c26e Successfully built spectral-cube Removed build tracker: '/build/pip-req-tracker-irryx9n3' Finished creating a wheel... Finished executing pipBuildPhase @nix { "action": "setPhase", "phase": "installPhase" } installing Executing pipInstallPhase /build/spectral-cube-0.5.0/dist /build/spectral-cube-0.5.0 Processing ./spectral_cube-0.0.0-py3-none-any.whl Requirement already satisfied: six in /nix/store/l0al3prxcng047sx0l2kf94n8z336r1c-python3.8-six-1.16.0/lib/python3.8/site-packages (from spectral-cube==0.0.0) (1.16.0) Requirement already satisfied: dask[array] in /nix/store/3rn1zpsffzdxmjyiwyp332cba6m2d78w-python3.8-dask-2021.06.2/lib/python3.8/site-packages (from spectral-cube==0.0.0) (2021.6.2) Requirement already satisfied: numpy>=1.8.0 in /nix/store/2sv6k1iixm06yb08cs41bd3pd7yb8bpn-python3.8-numpy-1.20.3/lib/python3.8/site-packages (from spectral-cube==0.0.0) (1.20.3) Requirement already satisfied: joblib in /nix/store/048yjpadw3rv4hfd2s27nmvvxnr96b95-python3.8-joblib-1.0.1/lib/python3.8/site-packages (from spectral-cube==0.0.0) (1.0.1) Requirement already satisfied: radio-beam in /nix/store/9llfn5969lws67gpmrm8wsb0jni2qxc7-python3.8-radio_beam-0.3.3/lib/python3.8/site-packages (from spectral-cube==0.0.0) (0.0.0) Requirement already satisfied: astropy in /nix/store/ri5i569y9rzf7xxxm4gbakcjv1yxmvzv-python3.8-astropy-4.2/lib/python3.8/site-packages (from spectral-cube==0.0.0) (4.2) Requirement already satisfied: pyerfa in /nix/store/b19wg619wb9vy7jvz88ass11arvwzb2q-python3.8-pyerfa-1.7.1.1/lib/python3.8/site-packages (from astropy->spectral-cube==0.0.0) (0.0.0) Requirement already satisfied: cloudpickle>=1.1.1 in /nix/store/z3p7wqffby7dvwdak4ahsi68whxbhyqg-python3.8-cloudpickle-1.6.0/lib/python3.8/site-packages (from dask[array]->spectral-cube==0.0.0) (1.6.0) Requirement already satisfied: partd>=0.3.10 in /nix/store/kjaa2fb0rm3f3xmaw29xkhpfawg12752-python3.8-partd-1.2.0/lib/python3.8/site-packages (from dask[array]->spectral-cube==0.0.0) (1.2.0) Requirement already satisfied: pyyaml in /nix/store/b803bp3q2nl4a9xq4ih233pvli3mdvjc-python3.8-PyYAML-5.4.1.1/lib/python3.8/site-packages (from dask[array]->spectral-cube==0.0.0) (5.4.1) Requirement already satisfied: toolz>=0.8.2 in /nix/store/7zvqy4wf6401yq39y6pnfpnwi5qgimhl-python3.8-toolz-0.11.1/lib/python3.8/site-packages (from dask[array]->spectral-cube==0.0.0) (0.11.1) Requirement already satisfied: fsspec>=0.6.0 in /nix/store/d188yd4g6qq32mzj8k14kr2igwsv4dax-python3.8-fsspec-2021.07.0/lib/python3.8/site-packages (from dask[array]->spectral-cube==0.0.0) (2021.7.0) Requirement already satisfied: locket in /nix/store/j43ss8fvm2z4979g1a0hhqbmd20c1h05-python3.8-locket-0.2.1/lib/python3.8/site-packages (from partd>=0.3.10->dask[array]->spectral-cube==0.0.0) (0.2.1) Requirement already satisfied: scipy in /nix/store/hb9zgab59z1r2g5gvai0d8p72p7fmiic-python3.8-scipy-1.6.3/lib/python3.8/site-packages (from radio-beam->spectral-cube==0.0.0) (1.6.3) Installing collected packages: spectral-cube Successfully installed spectral-cube-0.0.0 /build/spectral-cube-0.5.0 Finished executing pipInstallPhase @nix { "action": "setPhase", "phase": "fixupPhase" } post-installation fixup shrinking RPATHs of ELF executables and libraries in /nix/store/lh7vwljbmvn5n0q89h3srv09zs65zc8b-python3.8-spectral-cube-0.5.0 strip is /nix/store/v8imx1nvyz0hgvx9cbcmh6gp4ngw3ffj-binutils-2.35.1/bin/strip stripping (with command strip and flags -S) in /nix/store/lh7vwljbmvn5n0q89h3srv09zs65zc8b-python3.8-spectral-cube-0.5.0/lib patching script interpreter paths in /nix/store/lh7vwljbmvn5n0q89h3srv09zs65zc8b-python3.8-spectral-cube-0.5.0 checking for references to /build/ in /nix/store/lh7vwljbmvn5n0q89h3srv09zs65zc8b-python3.8-spectral-cube-0.5.0... Executing pythonRemoveTestsDir Finished executing pythonRemoveTestsDir @nix { "action": "setPhase", "phase": "installCheckPhase" } running install tests no Makefile or custom installCheckPhase, doing nothing @nix { "action": "setPhase", "phase": "pythonCatchConflictsPhase" } pythonCatchConflictsPhase @nix { "action": "setPhase", "phase": "pythonRemoveBinBytecodePhase" } pythonRemoveBinBytecodePhase @nix { "action": "setPhase", "phase": "pythonImportsCheckPhase" } pythonImportsCheckPhase Executing pythonImportsCheckPhase @nix { "action": "setPhase", "phase": "pytestCheckPhase" } pytestCheckPhase Executing pytestCheckPhase /nix/store/ri5i569y9rzf7xxxm4gbakcjv1yxmvzv-python3.8-astropy-4.2/lib/python3.8/site-packages/astropy/config/configuration.py:582: ConfigurationMissingWarning: Configuration defaults will be used due to FileNotFoundError:2 on None warn(ConfigurationMissingWarning(msg)) ============================= test session starts ============================== platform linux -- Python 3.8.11, pytest-6.2.4, py-1.10.0, pluggy-0.13.1 rootdir: /build/spectral-cube-0.5.0, configfile: setup.cfg plugins: hypothesis-6.14.0, astropy-header-0.1.2, doctestplus-0.9.0, filter-subpackage-0.1.1, cov-2.12.1, remotedata-0.3.2, openfiles-0.5.0, arraydiff-0.3 collecting ... WARNING: CacheMissingWarning: Remote data cache could not be accessed due to FileNotFoundError: [Errno 2] No such file or directory: '/homeless-shelter/.astropy' [astropy.utils.data] WARNING: CacheMissingWarning: Not clearing data cache - cache inaccessible due to FileNotFoundError: [Errno 2] No such file or directory: '/homeless-shelter/.astropy' [astropy.utils.data] WARNING: IERSStaleWarning: leap-second file is expired. [astropy.utils.iers.iers]  collecting 0 items  collecting 134 items  collecting 807 items  collected 1602 items  spectral_cube/spectral_axis.py . [ 0%] spectral_cube/io/tests/test_casa_dask.py ssssssssssssss [ 0%] spectral_cube/io/tests/test_casa_low_level_io.py ssssssss.ssssssssssssss [ 2%] ssssssss. [ 2%] spectral_cube/io/tests/test_casa_wcs.py ssssssssssssssssssssssssssssssss [ 4%] ssssssssssssssssss [ 6%] spectral_cube/tests/test_analysis_functions.py ................. [ 7%] spectral_cube/tests/test_casafuncs.py ......ssssssssssssss [ 8%] spectral_cube/tests/test_cube_utils.py ....... [ 8%] spectral_cube/tests/test_dask.py .s. [ 8%] spectral_cube/tests/test_io.py .................. [ 10%] spectral_cube/tests/test_masks.py ...................................... [ 12%] ...............................................XX.... [ 15%] spectral_cube/tests/test_moments.py .................................... [ 18%] ........................................................................ [ 22%] ........................................................................ [ 27%] ........ [ 27%] spectral_cube/tests/test_performance.py ...s.. [ 27%] spectral_cube/tests/test_projection.py .......................x......... [ 29%] ............x................................................ [ 33%] spectral_cube/tests/test_regrid.py ..................................... [ 36%] . [ 36%] spectral_cube/tests/test_spectral_axis.py .............................. [ 38%] ...................... [ 39%] spectral_cube/tests/test_spectral_cube.py .............................. [ 41%] ........................................................................ [ 45%] ........................................................................ [ 50%] ........................................................................ [ 54%] ............s.....s...........sssss..................................... [ 59%] ....ssssss.............................................................. [ 63%] ........................................................................ [ 68%] ............ssssss......ssssssssssss......ssssssssssss......ssssssssssss [ 72%] ......ssssssssssss......ssssss.......................................... [ 77%] ................................................ssssss......ssssssssssss [ 81%] ......ssssssssssss......ssssssssssss......ssssssssssss......ssssss...... [ 86%] ...........................s.s..............xx.......................... [ 90%] ............................................................. [ 94%] spectral_cube/tests/test_stokes_spectral_cube.py ....................... [ 95%] ................... [ 97%] spectral_cube/tests/test_subcubes.py ..ssssssssssssssssssss [ 98%] spectral_cube/tests/test_visualization.py ....ssssssss [ 99%] spectral_cube/tests/test_wcs_utils.py ............ [100%] ===== 1323 passed, 273 skipped, 4 xfailed, 2 xpassed in 265.18s (0:04:25) ====== Finished executing pytestCheckPhase @nix { "action": "setPhase", "phase": "pytestcachePhase" } pytestcachePhase