unpacking sources unpacking source archive /nix/store/sp2qx4whrhhwnb1fknhk5m84cxanmybs-source source root is source patching sources configuring fixing cmake files... cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_SKIP_BUILD_RPATH=ON -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/share/doc/coordgen -DCMAKE_INSTALL_INFODIR=/nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/share/man -DCMAKE_INSTALL_OLDINCLUDEDIR=/nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include -DCMAKE_INSTALL_SBINDIR=/nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/lib -DCMAKE_POLICY_DEFAULT_CMP0025=NEW -DCMAKE_OSX_SYSROOT= -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_STRIP=/nix/store/fp2h123793bxln4cjxy0mz08sf4nx2m3-binutils-2.35.1/bin/strip -DCMAKE_RANLIB=/nix/store/fp2h123793bxln4cjxy0mz08sf4nx2m3-binutils-2.35.1/bin/ranlib -DCMAKE_AR=/nix/store/fp2h123793bxln4cjxy0mz08sf4nx2m3-binutils-2.35.1/bin/ar -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_INSTALL_PREFIX=/nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0 -- The C compiler identification is GNU 10.3.0 -- The CXX compiler identification is GNU 10.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /nix/store/0sqbi0agffx7fvzgr4zvr3zk1l6kdnr4-gcc-wrapper-10.3.0/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /nix/store/0sqbi0agffx7fvzgr4zvr3zk1l6kdnr4-gcc-wrapper-10.3.0/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- maeparser include dir set as '/nix/store/z8s69z5p1khdpsa9qlmc0lhhw8dxv9x5-maeparser-1.2.4/include' -- maeparser libraries set as '/nix/store/z8s69z5p1khdpsa9qlmc0lhhw8dxv9x5-maeparser-1.2.4/lib/libmaeparser.so' -- Found compiled maeparser library at -- Found Boost: /nix/store/l6zzrxjas1rr9qmr7i25025c7wsvrsl3-boost-1.69.0-dev/include (found version "1.69.0") -- Found Boost: /nix/store/l6zzrxjas1rr9qmr7i25025c7wsvrsl3-boost-1.69.0-dev/include (found version "1.69.0") found components: filesystem -- Found Boost: /nix/store/l6zzrxjas1rr9qmr7i25025c7wsvrsl3-boost-1.69.0-dev/include (found version "1.69.0") found components: filesystem unit_test_framework -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_POLICY_DEFAULT_CMP0025 -- Build files have been written to: /build/source/build cmake: enabled parallel building building build flags: -j2 -l2 SHELL=/nix/store/qfb4j7w2fjjq953nd9xncz5mymj5n0kb-bash-5.1-p8/bin/bash [ 4%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o [ 9%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o [ 14%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o [ 19%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o [ 23%] Building CXX object CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o [ 28%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o [ 33%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o [ 38%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o [ 42%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o [ 47%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o [ 52%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o [ 57%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o [ 61%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o [ 66%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o [ 71%] Linking CXX shared library libcoordgen.so [ 71%] Built target coordgen [ 76%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o [ 80%] Linking CXX executable example [ 80%] Built target example [ 85%] Building CXX object test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o [ 90%] Linking CXX executable test_smilesparser [ 90%] Built target test_smilesparser [ 95%] Building CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o [100%] Linking CXX executable test_coordgen [100%] Built target test_coordgen installing install flags: SHELL=/nix/store/qfb4j7w2fjjq953nd9xncz5mymj5n0kb-bash-5.1-p8/bin/bash install Consolidate compiler generated dependencies of target coordgen [ 71%] Built target coordgen Consolidate compiler generated dependencies of target example [ 80%] Built target example Consolidate compiler generated dependencies of target test_smilesparser [ 90%] Built target test_smilesparser Consolidate compiler generated dependencies of target test_coordgen [100%] Built target test_coordgen Install the project... -- Install configuration: "Release" -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/lib/libcoordgen.so.3.0.0 -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/lib/libcoordgen.so.3 -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/lib/libcoordgen.so -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/CoordgenConfig.hpp -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/CoordgenFragmentBuilder.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/CoordgenFragmenter.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/CoordgenMacrocycleBuilder.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/CoordgenMinimizer.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerAtom.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerBendInteraction.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerBond.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerClashInteraction.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerEZConstrainInteraction.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerFragment.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizer.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerInteraction.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerMarchingSquares.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerMaths.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerMolecule.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerResidue.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerResidueInteraction.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerRing.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/include/coordgen/sketcherMinimizerStretchInteraction.h -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/lib/cmake/coordgen-config.cmake -- Installing: /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/lib/cmake/coordgen-config-release.cmake post-installation fixup shrinking RPATHs of ELF executables and libraries in /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0 shrinking /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/lib/libcoordgen.so.3.0.0 strip is /nix/store/fp2h123793bxln4cjxy0mz08sf4nx2m3-binutils-2.35.1/bin/strip stripping (with command strip and flags -S) in /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0/lib patching script interpreter paths in /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0 checking for references to /build/ in /nix/store/rjsf8w75bg2g9hprv5k2c02wrmq4cqrw-coordgenlibs-3.0.0...