Sourcing python-remove-tests-dir-hook Sourcing python-catch-conflicts-hook.sh Sourcing python-remove-bin-bytecode-hook.sh Sourcing setuptools-build-hook Using setuptoolsBuildPhase Using setuptoolsShellHook Sourcing pip-install-hook Using pipInstallPhase Sourcing python-imports-check-hook.sh Using pythonImportsCheckPhase Sourcing python-namespaces-hook unpacking sources unpacking source archive /nix/store/5i31dvac7qalildn5cavclwqi9lrc2mk-scikit-bio-0.5.6.tar.gz source root is scikit-bio-0.5.6 setting SOURCE_DATE_EPOCH to timestamp 1584551677 of file scikit-bio-0.5.6/setup.cfg patching sources configuring no configure script, doing nothing building Executing setuptoolsBuildPhase running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.8 creating build/lib.linux-x86_64-3.8/skbio copying skbio/_base.py -> build/lib.linux-x86_64-3.8/skbio copying skbio/workflow.py -> build/lib.linux-x86_64-3.8/skbio copying skbio/__init__.py -> build/lib.linux-x86_64-3.8/skbio copying skbio/test.py -> build/lib.linux-x86_64-3.8/skbio creating build/lib.linux-x86_64-3.8/benchmarks copying benchmarks/benchmarks.py -> build/lib.linux-x86_64-3.8/benchmarks copying benchmarks/__init__.py -> build/lib.linux-x86_64-3.8/benchmarks creating build/lib.linux-x86_64-3.8/skbio/io copying skbio/io/_exception.py -> build/lib.linux-x86_64-3.8/skbio/io copying skbio/io/_warning.py -> build/lib.linux-x86_64-3.8/skbio/io copying skbio/io/__init__.py -> build/lib.linux-x86_64-3.8/skbio/io copying skbio/io/_fileobject.py -> build/lib.linux-x86_64-3.8/skbio/io copying skbio/io/registry.py -> build/lib.linux-x86_64-3.8/skbio/io copying skbio/io/_iosources.py -> build/lib.linux-x86_64-3.8/skbio/io copying skbio/io/util.py -> build/lib.linux-x86_64-3.8/skbio/io creating build/lib.linux-x86_64-3.8/skbio/diversity copying skbio/diversity/_driver.py -> build/lib.linux-x86_64-3.8/skbio/diversity copying skbio/diversity/__init__.py -> build/lib.linux-x86_64-3.8/skbio/diversity copying skbio/diversity/_util.py -> build/lib.linux-x86_64-3.8/skbio/diversity copying skbio/diversity/_block.py -> build/lib.linux-x86_64-3.8/skbio/diversity creating build/lib.linux-x86_64-3.8/skbio/alignment copying skbio/alignment/_pairwise.py -> build/lib.linux-x86_64-3.8/skbio/alignment copying skbio/alignment/_repr.py -> build/lib.linux-x86_64-3.8/skbio/alignment copying skbio/alignment/_tabular_msa.py -> build/lib.linux-x86_64-3.8/skbio/alignment copying skbio/alignment/__init__.py -> build/lib.linux-x86_64-3.8/skbio/alignment copying skbio/alignment/_indexing.py -> build/lib.linux-x86_64-3.8/skbio/alignment creating build/lib.linux-x86_64-3.8/skbio/stats copying skbio/stats/gradient.py -> build/lib.linux-x86_64-3.8/skbio/stats copying skbio/stats/power.py -> build/lib.linux-x86_64-3.8/skbio/stats copying skbio/stats/composition.py -> build/lib.linux-x86_64-3.8/skbio/stats copying skbio/stats/__init__.py -> build/lib.linux-x86_64-3.8/skbio/stats copying skbio/stats/_misc.py -> build/lib.linux-x86_64-3.8/skbio/stats copying skbio/stats/_subsample.py -> build/lib.linux-x86_64-3.8/skbio/stats creating build/lib.linux-x86_64-3.8/skbio/metadata copying skbio/metadata/_testing.py -> build/lib.linux-x86_64-3.8/skbio/metadata copying skbio/metadata/_interval.py -> build/lib.linux-x86_64-3.8/skbio/metadata copying skbio/metadata/_mixin.py -> build/lib.linux-x86_64-3.8/skbio/metadata copying skbio/metadata/__init__.py -> build/lib.linux-x86_64-3.8/skbio/metadata copying skbio/metadata/_repr.py -> build/lib.linux-x86_64-3.8/skbio/metadata creating build/lib.linux-x86_64-3.8/skbio/sequence copying skbio/sequence/__init__.py -> build/lib.linux-x86_64-3.8/skbio/sequence copying skbio/sequence/_genetic_code.py -> build/lib.linux-x86_64-3.8/skbio/sequence copying skbio/sequence/_rna.py -> build/lib.linux-x86_64-3.8/skbio/sequence copying skbio/sequence/_repr.py -> build/lib.linux-x86_64-3.8/skbio/sequence copying skbio/sequence/_protein.py -> build/lib.linux-x86_64-3.8/skbio/sequence copying skbio/sequence/_grammared_sequence.py -> build/lib.linux-x86_64-3.8/skbio/sequence copying skbio/sequence/distance.py -> build/lib.linux-x86_64-3.8/skbio/sequence copying skbio/sequence/_nucleotide_mixin.py -> build/lib.linux-x86_64-3.8/skbio/sequence copying skbio/sequence/_dna.py -> build/lib.linux-x86_64-3.8/skbio/sequence copying skbio/sequence/_sequence.py -> build/lib.linux-x86_64-3.8/skbio/sequence creating build/lib.linux-x86_64-3.8/skbio/tree copying skbio/tree/_exception.py -> build/lib.linux-x86_64-3.8/skbio/tree copying skbio/tree/__init__.py -> build/lib.linux-x86_64-3.8/skbio/tree copying skbio/tree/_tree.py -> build/lib.linux-x86_64-3.8/skbio/tree copying skbio/tree/_nj.py -> build/lib.linux-x86_64-3.8/skbio/tree copying skbio/tree/_majority_rule.py -> build/lib.linux-x86_64-3.8/skbio/tree creating build/lib.linux-x86_64-3.8/skbio/util copying skbio/util/_exception.py -> build/lib.linux-x86_64-3.8/skbio/util copying skbio/util/_testing.py -> build/lib.linux-x86_64-3.8/skbio/util copying skbio/util/_decorator.py -> build/lib.linux-x86_64-3.8/skbio/util copying skbio/util/_misc.py -> build/lib.linux-x86_64-3.8/skbio/util copying skbio/util/_warning.py -> build/lib.linux-x86_64-3.8/skbio/util copying skbio/util/__init__.py -> build/lib.linux-x86_64-3.8/skbio/util creating build/lib.linux-x86_64-3.8/skbio/tests copying skbio/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/tests copying skbio/tests/test_workflow.py -> build/lib.linux-x86_64-3.8/skbio/tests copying skbio/tests/test_base.py -> build/lib.linux-x86_64-3.8/skbio/tests creating build/lib.linux-x86_64-3.8/skbio/io/tests copying skbio/io/tests/test_iosources.py -> build/lib.linux-x86_64-3.8/skbio/io/tests copying skbio/io/tests/test_registry.py -> build/lib.linux-x86_64-3.8/skbio/io/tests copying skbio/io/tests/test_util.py -> build/lib.linux-x86_64-3.8/skbio/io/tests copying skbio/io/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/io/tests creating build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/_blast.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/emptyfile.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/_base.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/genbank.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/phylip.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/ordination.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/lsmat.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/fasta.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/__init__.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/gff3.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/blast6.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/qseq.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/blast7.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/clustal.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/newick.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/fastq.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/embl.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/stockholm.py -> build/lib.linux-x86_64-3.8/skbio/io/format copying skbio/io/format/_sequence_feature_vocabulary.py -> build/lib.linux-x86_64-3.8/skbio/io/format creating build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_newick.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_fasta.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_emptyfile.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_base.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_genbank.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_fastq.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_blast6.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_blast7.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_qseq.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_gff3.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_phylip.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_clustal.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_ordination.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_lsmat.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_stockholm.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_embl.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests copying skbio/io/format/tests/test_sequence_feature_vocabulary.py -> build/lib.linux-x86_64-3.8/skbio/io/format/tests creating build/lib.linux-x86_64-3.8/skbio/diversity/beta copying skbio/diversity/beta/__init__.py -> build/lib.linux-x86_64-3.8/skbio/diversity/beta copying skbio/diversity/beta/_unifrac.py -> build/lib.linux-x86_64-3.8/skbio/diversity/beta creating build/lib.linux-x86_64-3.8/skbio/diversity/tests copying skbio/diversity/tests/test_driver.py -> build/lib.linux-x86_64-3.8/skbio/diversity/tests copying skbio/diversity/tests/test_block.py -> build/lib.linux-x86_64-3.8/skbio/diversity/tests copying skbio/diversity/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/diversity/tests copying skbio/diversity/tests/test_util.py -> build/lib.linux-x86_64-3.8/skbio/diversity/tests creating build/lib.linux-x86_64-3.8/skbio/diversity/alpha copying skbio/diversity/alpha/_gini.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha copying skbio/diversity/alpha/__init__.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha copying skbio/diversity/alpha/_base.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha copying skbio/diversity/alpha/_ace.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha copying skbio/diversity/alpha/_faith_pd.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha creating build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests copying skbio/diversity/beta/tests/test_unifrac.py -> build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests creating build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_faith_pd.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests creating build/lib.linux-x86_64-3.8/skbio/alignment/tests copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-x86_64-3.8/skbio/alignment/tests copying skbio/alignment/tests/test_tabular_msa.py -> build/lib.linux-x86_64-3.8/skbio/alignment/tests copying skbio/alignment/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/alignment/tests copying skbio/alignment/tests/test_ssw.py -> build/lib.linux-x86_64-3.8/skbio/alignment/tests creating build/lib.linux-x86_64-3.8/skbio/alignment/_lib copying skbio/alignment/_lib/__init__.py -> build/lib.linux-x86_64-3.8/skbio/alignment/_lib creating build/lib.linux-x86_64-3.8/skbio/stats/ordination copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination copying skbio/stats/ordination/_utils.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination copying skbio/stats/ordination/__init__.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination copying skbio/stats/ordination/_ordination_results.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination creating build/lib.linux-x86_64-3.8/skbio/stats/distance copying skbio/stats/distance/__init__.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance copying skbio/stats/distance/_permdisp.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance copying skbio/stats/distance/_permanova.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance copying skbio/stats/distance/_base.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance copying skbio/stats/distance/_anosim.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance copying skbio/stats/distance/_bioenv.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance copying skbio/stats/distance/_mantel.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance creating build/lib.linux-x86_64-3.8/skbio/stats/evolve copying skbio/stats/evolve/_hommola.py -> build/lib.linux-x86_64-3.8/skbio/stats/evolve copying skbio/stats/evolve/__init__.py -> build/lib.linux-x86_64-3.8/skbio/stats/evolve creating build/lib.linux-x86_64-3.8/skbio/stats/tests copying skbio/stats/tests/test_power.py -> build/lib.linux-x86_64-3.8/skbio/stats/tests copying skbio/stats/tests/test_composition.py -> build/lib.linux-x86_64-3.8/skbio/stats/tests copying skbio/stats/tests/test_gradient.py -> build/lib.linux-x86_64-3.8/skbio/stats/tests copying skbio/stats/tests/test_misc.py -> build/lib.linux-x86_64-3.8/skbio/stats/tests copying skbio/stats/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/stats/tests copying skbio/stats/tests/test_subsample.py -> build/lib.linux-x86_64-3.8/skbio/stats/tests creating build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_redundancy_analysis.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_ordination_results.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_util.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_correspondence_analysis.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests copying skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests creating build/lib.linux-x86_64-3.8/skbio/stats/distance/tests copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests copying skbio/stats/distance/tests/test_permdisp.py -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests creating build/lib.linux-x86_64-3.8/skbio/stats/evolve/tests copying skbio/stats/evolve/tests/test_hommola.py -> build/lib.linux-x86_64-3.8/skbio/stats/evolve/tests copying skbio/stats/evolve/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/stats/evolve/tests creating build/lib.linux-x86_64-3.8/skbio/metadata/tests copying skbio/metadata/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/metadata/tests copying skbio/metadata/tests/test_intersection.py -> build/lib.linux-x86_64-3.8/skbio/metadata/tests copying skbio/metadata/tests/test_mixin.py -> build/lib.linux-x86_64-3.8/skbio/metadata/tests copying skbio/metadata/tests/test_interval.py -> build/lib.linux-x86_64-3.8/skbio/metadata/tests creating build/lib.linux-x86_64-3.8/skbio/sequence/tests copying skbio/sequence/tests/test_protein.py -> build/lib.linux-x86_64-3.8/skbio/sequence/tests copying skbio/sequence/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/sequence/tests copying skbio/sequence/tests/test_rna.py -> build/lib.linux-x86_64-3.8/skbio/sequence/tests copying skbio/sequence/tests/test_distance.py -> build/lib.linux-x86_64-3.8/skbio/sequence/tests copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-x86_64-3.8/skbio/sequence/tests copying skbio/sequence/tests/test_grammared_sequence.py -> build/lib.linux-x86_64-3.8/skbio/sequence/tests copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-x86_64-3.8/skbio/sequence/tests copying skbio/sequence/tests/test_dna.py -> build/lib.linux-x86_64-3.8/skbio/sequence/tests copying skbio/sequence/tests/test_nucleotide_sequences.py -> build/lib.linux-x86_64-3.8/skbio/sequence/tests creating build/lib.linux-x86_64-3.8/skbio/tree/tests copying skbio/tree/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/tree/tests copying skbio/tree/tests/test_tree.py -> build/lib.linux-x86_64-3.8/skbio/tree/tests copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-x86_64-3.8/skbio/tree/tests copying skbio/tree/tests/test_nj.py -> build/lib.linux-x86_64-3.8/skbio/tree/tests creating build/lib.linux-x86_64-3.8/skbio/util/tests copying skbio/util/tests/test_testing.py -> build/lib.linux-x86_64-3.8/skbio/util/tests copying skbio/util/tests/__init__.py -> build/lib.linux-x86_64-3.8/skbio/util/tests copying skbio/util/tests/test_misc.py -> build/lib.linux-x86_64-3.8/skbio/util/tests copying skbio/util/tests/test_decorator.py -> build/lib.linux-x86_64-3.8/skbio/util/tests creating build/lib.linux-x86_64-3.8/skbio/io/tests/data copying skbio/io/tests/data/real_file -> build/lib.linux-x86_64-3.8/skbio/io/tests/data copying skbio/io/tests/data/big5_file.gz -> build/lib.linux-x86_64-3.8/skbio/io/tests/data copying skbio/io/tests/data/real_file_2 -> build/lib.linux-x86_64-3.8/skbio/io/tests/data copying skbio/io/tests/data/example_file.gz -> build/lib.linux-x86_64-3.8/skbio/io/tests/data copying skbio/io/tests/data/example_file -> build/lib.linux-x86_64-3.8/skbio/io/tests/data copying skbio/io/tests/data/big5_file.bz2 -> build/lib.linux-x86_64-3.8/skbio/io/tests/data copying skbio/io/tests/data/big5_file -> build/lib.linux-x86_64-3.8/skbio/io/tests/data copying skbio/io/tests/data/example_file.bz2 -> build/lib.linux-x86_64-3.8/skbio/io/tests/data creating build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_invalid_data_type -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record_simple -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error21 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gf_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record_lower -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_multi_records -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_bad_missing_directive -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error13 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error19 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_single_record -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_single_record -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_w_beginning_whitespace -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/whitespace_only -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error3 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_max_width_1 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error9 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_single_reference -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_extensive_mixed -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error4 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_minimal -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_data_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_multi_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_tab.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_minimal -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_header_too_short -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_single_seq_sanger -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error14 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_default_multi_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_tabular_msa_different_type -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_no_data -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_different_padding -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_single_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_differing_seq_lengths -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_all_data_types -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_msa -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gr_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_default_single_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error22 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_dna -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_multi_record -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_rna -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_differing_gr_data_length -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error10 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_no_data -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_missing_locus_name -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_single_record_upper -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_mixed_nans -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_uniprot_record -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_extensive -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_invalid_column_types -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_max_width_5 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error7 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/empty -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_single_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_two_of_each_metadata -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_x -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_gc -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gc_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error17 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_header_too_long -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_dna_3_seqs -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_vtab.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error15 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_mixed_nans -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_constructed -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_seq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_and_blast7_default -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error5 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_invalid_differing_fields -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_legacy_format -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_tile -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_gr -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_for_sniffer -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_two_chunks -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error8 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error2 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_invalid_type_in_column -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_no_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_multi_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error20 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_metadata_only -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_single_record_lower -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_tabular_msa_different_type -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error18 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error12 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_no_qual.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error16 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_feature_level_record -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_diff_ids.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_minimal -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error24 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_whitespace_only_lines -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_gibberish -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error6 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_single_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_spaces.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_references -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_feature_level_record_no_FT -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_default_multi_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_y -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_nonstring_labels -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_multi_records -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_reference_items -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_trees -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_seq_too_short -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error1 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record_upper -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error23 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_footer -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_references -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_space.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_data_only -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_error11 -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_multi_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/tsv_10_fields -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_blank_lines -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_default_single_line -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_double_qual.fastq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_filter -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.linux-x86_64-3.8/skbio/io/format/tests/data creating build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data creating build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt creating build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/data creating build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/data/qiime-191-tt copying skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/data/qiime-191-tt copying skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/data/qiime-191-tt copying skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/data/qiime-191-tt copying skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/data/qiime-191-tt creating build/lib.linux-x86_64-3.8/skbio/stats/tests/data copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-x86_64-3.8/skbio/stats/tests/data copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-x86_64-3.8/skbio/stats/tests/data copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-x86_64-3.8/skbio/stats/tests/data copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-x86_64-3.8/skbio/stats/tests/data copying skbio/stats/tests/data/vr_raw -> build/lib.linux-x86_64-3.8/skbio/stats/tests/data copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-x86_64-3.8/skbio/stats/tests/data copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-x86_64-3.8/skbio/stats/tests/data copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-x86_64-3.8/skbio/stats/tests/data copying skbio/stats/tests/data/vr_out -> build/lib.linux-x86_64-3.8/skbio/stats/tests/data copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-x86_64-3.8/skbio/stats/tests/data copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-x86_64-3.8/skbio/stats/tests/data copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-x86_64-3.8/skbio/stats/tests/data creating build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/varechem.csv -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/varespec.csv -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_skbio -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data creating build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm3.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm4.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm2.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data running build_ext building 'skbio.metadata._intersection' extension creating build/temp.linux-x86_64-3.8 creating build/temp.linux-x86_64-3.8/skbio creating build/temp.linux-x86_64-3.8/skbio/metadata gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include -I/nix/store/66p7i56lg3zzp7nj6g0fywb704ihp4iy-python3-3.8.11/include/python3.8 -c skbio/metadata/_intersection.c -o build/temp.linux-x86_64-3.8/skbio/metadata/_intersection.o gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.11/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.6.0.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.4.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.20/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.35.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-6.3p08/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-1.1.1l/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.11/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.6.0.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.4.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.20/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.35.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-6.3p08/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-1.1.1l/lib build/temp.linux-x86_64-3.8/skbio/metadata/_intersection.o -L/nix/store/66p7i56lg3zzp7nj6g0fywb704ihp4iy-python3-3.8.11/lib -o build/lib.linux-x86_64-3.8/skbio/metadata/_intersection.cpython-38-x86_64-linux-gnu.so building 'skbio.stats.__subsample' extension creating build/temp.linux-x86_64-3.8/skbio/stats gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include -I/nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include -I/nix/store/66p7i56lg3zzp7nj6g0fywb704ihp4iy-python3-3.8.11/include/python3.8 -c skbio/stats/__subsample.c -o build/temp.linux-x86_64-3.8/skbio/stats/__subsample.o In file included from /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944, from /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4, from skbio/stats/__subsample.c:617: /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp-Wcpp8;;] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.11/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.6.0.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.4.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.20/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.35.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-6.3p08/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-1.1.1l/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.11/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.6.0.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.4.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.20/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.35.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-6.3p08/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-1.1.1l/lib build/temp.linux-x86_64-3.8/skbio/stats/__subsample.o -L/nix/store/66p7i56lg3zzp7nj6g0fywb704ihp4iy-python3-3.8.11/lib -o build/lib.linux-x86_64-3.8/skbio/stats/__subsample.cpython-38-x86_64-linux-gnu.so building 'skbio.alignment._ssw_wrapper' extension creating build/temp.linux-x86_64-3.8/skbio/alignment creating build/temp.linux-x86_64-3.8/skbio/alignment/_lib gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include -I/nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include -I/nix/store/66p7i56lg3zzp7nj6g0fywb704ihp4iy-python3-3.8.11/include/python3.8 -c skbio/alignment/_ssw_wrapper.c -o build/temp.linux-x86_64-3.8/skbio/alignment/_ssw_wrapper.o -Wno-error=declaration-after-statement In file included from /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944, from /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4, from skbio/alignment/_ssw_wrapper.c:624: /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp-Wcpp8;;] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include -I/nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include -I/nix/store/66p7i56lg3zzp7nj6g0fywb704ihp4iy-python3-3.8.11/include/python3.8 -c skbio/alignment/_lib/ssw.c -o build/temp.linux-x86_64-3.8/skbio/alignment/_lib/ssw.o -Wno-error=declaration-after-statement gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.11/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.6.0.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.4.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.20/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.35.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-6.3p08/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-1.1.1l/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.11/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.6.0.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.4.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.20/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.35.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-6.3p08/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-1.1.1l/lib build/temp.linux-x86_64-3.8/skbio/alignment/_ssw_wrapper.o build/temp.linux-x86_64-3.8/skbio/alignment/_lib/ssw.o -L/nix/store/66p7i56lg3zzp7nj6g0fywb704ihp4iy-python3-3.8.11/lib -o build/lib.linux-x86_64-3.8/skbio/alignment/_ssw_wrapper.cpython-38-x86_64-linux-gnu.so building 'skbio.diversity._phylogenetic' extension creating build/temp.linux-x86_64-3.8/skbio/diversity gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include -I/nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include -I/nix/store/66p7i56lg3zzp7nj6g0fywb704ihp4iy-python3-3.8.11/include/python3.8 -c skbio/diversity/_phylogenetic.c -o build/temp.linux-x86_64-3.8/skbio/diversity/_phylogenetic.o In file included from /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944, from /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4, from skbio/diversity/_phylogenetic.c:617: /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp-Wcpp8;;] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.11/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.6.0.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.4.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.20/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.35.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-6.3p08/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-1.1.1l/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.11/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.6.0.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.4.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.20/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.35.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-6.3p08/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-1.1.1l/lib build/temp.linux-x86_64-3.8/skbio/diversity/_phylogenetic.o -L/nix/store/66p7i56lg3zzp7nj6g0fywb704ihp4iy-python3-3.8.11/lib -o build/lib.linux-x86_64-3.8/skbio/diversity/_phylogenetic.cpython-38-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/benchmarks copying build/lib.linux-x86_64-3.8/benchmarks/benchmarks.py -> build/bdist.linux-x86_64/wheel/benchmarks copying build/lib.linux-x86_64-3.8/benchmarks/__init__.py -> build/bdist.linux-x86_64/wheel/benchmarks creating build/bdist.linux-x86_64/wheel/skbio copying build/lib.linux-x86_64-3.8/skbio/test.py -> build/bdist.linux-x86_64/wheel/skbio creating build/bdist.linux-x86_64/wheel/skbio/io copying build/lib.linux-x86_64-3.8/skbio/io/_iosources.py -> build/bdist.linux-x86_64/wheel/skbio/io copying build/lib.linux-x86_64-3.8/skbio/io/util.py -> build/bdist.linux-x86_64/wheel/skbio/io copying build/lib.linux-x86_64-3.8/skbio/io/registry.py -> build/bdist.linux-x86_64/wheel/skbio/io copying build/lib.linux-x86_64-3.8/skbio/io/_exception.py -> build/bdist.linux-x86_64/wheel/skbio/io creating build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/ordination.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/emptyfile.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/phylip.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/fastq.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/genbank.py -> build/bdist.linux-x86_64/wheel/skbio/io/format creating build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_newick.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_stockholm.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_embl.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_genbank.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_fastq.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_ordination.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_blast6.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_blast7.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_qseq.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests creating build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast6_default_multi_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_malformed_gr_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_multiple_trees -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_spaces.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_qual_vtab.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/embl_single_record_upper -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_invalid_missing_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast6_custom_single_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_missing_footer -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast6_default_single_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/genbank_single_record_upper -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error8 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error2 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error24 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_differing_seq_lengths -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_two_chunks -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_custom_multi_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_runon_references -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_double_qual.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error16 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/embl_single_record -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast6_invalid_type_in_column -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qseq_invalid_tile -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error11 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_max_width_5 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast6_invalid_column_types -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_10_seqs -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_differing_gr_data_length -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_extensive_mixed -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error5 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_missing_reference_items -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error23 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qseq_invalid_x -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_invalid_header_too_long -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_invalid_gibberish -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_two_of_each_metadata -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_malformed_gc_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/embl_single_record_simple -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_nonstring_labels -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/embl_multi_records -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qseq_single_seq_sanger -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_long_qual.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_malformed_gf_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast6_custom_minimal -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qseq_invalid_lane -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/tsv_8_fields -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_invalid_data_type -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_invalid_no_data -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_example3_scores -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/tsv_10_fields -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/legacy9_invalid_differing_fields -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_short_qual.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_blank_lines_between_records -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_invalid_no_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_invalid_for_sniffer -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_multiple_msa -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/embl_w_beginning_whitespace -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/legacy9_mixed_nans -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error1 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_data_only -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast6_custom_multi_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_qual_null.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error15 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_multi_seq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_invalid_seq_too_short -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qseq_invalid_filter -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_metadata_only -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_max_width_1 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_multiple_references -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_duplicate_gc -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_tabular_msa_different_type -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error12 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/whitespace_only -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_3_seqs_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_no_qual.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error18 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_tabular_msa_different_type -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_ws_lines_between_records -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error20 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error6 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_diff_ids.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_blank_lines -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_single_seq_short -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_legacy_format -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_missing_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/legacy9_and_blast7_default -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_invalid_header_too_short -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_different_padding -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/genbank_multi_records -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/embl_feature_level_record_no_FT -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_no_data -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_missing_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error10 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_multi_seq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_qual_tab.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_double_seq.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_missing_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_blank_lines -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_2_seqs_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/genbank_single_record -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error4 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_whitespace_only_lines -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error22 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_qual_del.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_minimal -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_example2_scores -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qseq_invalid_y -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_all_data_types -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_custom_minimal -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/genbank_missing_locus_name -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error3 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error9 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_max_width_1 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_default_single_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error17 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_tabs.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_malformed_data_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_duplicate_gr -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/gff3_dna -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_qual_escape.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_custom_mixed_nans -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_dna_3_seqs -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/legacy9_single_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/gff3_single_record -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/embl_constructed -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qseq_invalid_read -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_single_seq_long -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_max_width_5 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error19 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error13 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error21 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error7 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/gff3_bad_missing_directive -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_custom_single_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/embl_single_record_lower -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/phylip_variable_length_ids -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_error14 -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_default_multi_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/embl_uniprot_record -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/embl_feature_level_record -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_extensive -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_single_reference -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/empty -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_single_seq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/gff3_multi_record -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_rna -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/error_qual_space.fastq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/qual_blanks_end_of_file -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_single_seq -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/genbank_single_record_lower -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/legacy9_multi_line -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_fasta.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_gff3.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_sequence_feature_vocabulary.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_lsmat.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_phylip.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_clustal.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_base.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/tests/test_emptyfile.py -> build/bdist.linux-x86_64/wheel/skbio/io/format/tests copying build/lib.linux-x86_64-3.8/skbio/io/format/fasta.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/_blast.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/gff3.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/lsmat.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/qseq.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/newick.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/_base.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/blast7.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/blast6.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/_sequence_feature_vocabulary.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/clustal.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/stockholm.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/format/embl.py -> build/bdist.linux-x86_64/wheel/skbio/io/format copying build/lib.linux-x86_64-3.8/skbio/io/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/io copying build/lib.linux-x86_64-3.8/skbio/io/_warning.py -> build/bdist.linux-x86_64/wheel/skbio/io creating build/bdist.linux-x86_64/wheel/skbio/io/tests copying build/lib.linux-x86_64-3.8/skbio/io/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/io/tests creating build/bdist.linux-x86_64/wheel/skbio/io/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/tests/data/example_file -> build/bdist.linux-x86_64/wheel/skbio/io/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/tests/data/example_file.gz -> build/bdist.linux-x86_64/wheel/skbio/io/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/tests/data/big5_file -> build/bdist.linux-x86_64/wheel/skbio/io/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/tests/data/real_file -> build/bdist.linux-x86_64/wheel/skbio/io/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/tests/data/example_file.bz2 -> build/bdist.linux-x86_64/wheel/skbio/io/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/tests/data/big5_file.bz2 -> build/bdist.linux-x86_64/wheel/skbio/io/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/tests/data/real_file_2 -> build/bdist.linux-x86_64/wheel/skbio/io/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/tests/data/big5_file.gz -> build/bdist.linux-x86_64/wheel/skbio/io/tests/data copying build/lib.linux-x86_64-3.8/skbio/io/tests/test_iosources.py -> build/bdist.linux-x86_64/wheel/skbio/io/tests copying build/lib.linux-x86_64-3.8/skbio/io/tests/test_registry.py -> build/bdist.linux-x86_64/wheel/skbio/io/tests copying build/lib.linux-x86_64-3.8/skbio/io/tests/test_util.py -> build/bdist.linux-x86_64/wheel/skbio/io/tests copying build/lib.linux-x86_64-3.8/skbio/io/_fileobject.py -> build/bdist.linux-x86_64/wheel/skbio/io creating build/bdist.linux-x86_64/wheel/skbio/tests copying build/lib.linux-x86_64-3.8/skbio/tests/test_base.py -> build/bdist.linux-x86_64/wheel/skbio/tests copying build/lib.linux-x86_64-3.8/skbio/tests/test_workflow.py -> build/bdist.linux-x86_64/wheel/skbio/tests copying build/lib.linux-x86_64-3.8/skbio/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/tests creating build/bdist.linux-x86_64/wheel/skbio/sequence copying build/lib.linux-x86_64-3.8/skbio/sequence/distance.py -> build/bdist.linux-x86_64/wheel/skbio/sequence creating build/bdist.linux-x86_64/wheel/skbio/sequence/tests copying build/lib.linux-x86_64-3.8/skbio/sequence/tests/test_nucleotide_sequences.py -> build/bdist.linux-x86_64/wheel/skbio/sequence/tests copying build/lib.linux-x86_64-3.8/skbio/sequence/tests/test_dna.py -> build/bdist.linux-x86_64/wheel/skbio/sequence/tests copying build/lib.linux-x86_64-3.8/skbio/sequence/tests/test_sequence.py -> build/bdist.linux-x86_64/wheel/skbio/sequence/tests copying build/lib.linux-x86_64-3.8/skbio/sequence/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/sequence/tests copying build/lib.linux-x86_64-3.8/skbio/sequence/tests/test_distance.py -> build/bdist.linux-x86_64/wheel/skbio/sequence/tests copying build/lib.linux-x86_64-3.8/skbio/sequence/tests/test_protein.py -> build/bdist.linux-x86_64/wheel/skbio/sequence/tests copying build/lib.linux-x86_64-3.8/skbio/sequence/tests/test_rna.py -> build/bdist.linux-x86_64/wheel/skbio/sequence/tests copying build/lib.linux-x86_64-3.8/skbio/sequence/tests/test_grammared_sequence.py -> build/bdist.linux-x86_64/wheel/skbio/sequence/tests copying build/lib.linux-x86_64-3.8/skbio/sequence/tests/test_genetic_code.py -> build/bdist.linux-x86_64/wheel/skbio/sequence/tests copying build/lib.linux-x86_64-3.8/skbio/sequence/_genetic_code.py -> build/bdist.linux-x86_64/wheel/skbio/sequence copying build/lib.linux-x86_64-3.8/skbio/sequence/_sequence.py -> build/bdist.linux-x86_64/wheel/skbio/sequence copying build/lib.linux-x86_64-3.8/skbio/sequence/_rna.py -> build/bdist.linux-x86_64/wheel/skbio/sequence copying build/lib.linux-x86_64-3.8/skbio/sequence/_repr.py -> build/bdist.linux-x86_64/wheel/skbio/sequence copying build/lib.linux-x86_64-3.8/skbio/sequence/_protein.py -> build/bdist.linux-x86_64/wheel/skbio/sequence copying build/lib.linux-x86_64-3.8/skbio/sequence/_dna.py -> build/bdist.linux-x86_64/wheel/skbio/sequence copying build/lib.linux-x86_64-3.8/skbio/sequence/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/sequence copying build/lib.linux-x86_64-3.8/skbio/sequence/_nucleotide_mixin.py -> build/bdist.linux-x86_64/wheel/skbio/sequence copying build/lib.linux-x86_64-3.8/skbio/sequence/_grammared_sequence.py -> build/bdist.linux-x86_64/wheel/skbio/sequence copying build/lib.linux-x86_64-3.8/skbio/workflow.py -> build/bdist.linux-x86_64/wheel/skbio creating build/bdist.linux-x86_64/wheel/skbio/metadata copying build/lib.linux-x86_64-3.8/skbio/metadata/_testing.py -> build/bdist.linux-x86_64/wheel/skbio/metadata copying build/lib.linux-x86_64-3.8/skbio/metadata/_interval.py -> build/bdist.linux-x86_64/wheel/skbio/metadata copying build/lib.linux-x86_64-3.8/skbio/metadata/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/metadata copying build/lib.linux-x86_64-3.8/skbio/metadata/_repr.py -> build/bdist.linux-x86_64/wheel/skbio/metadata creating build/bdist.linux-x86_64/wheel/skbio/metadata/tests copying build/lib.linux-x86_64-3.8/skbio/metadata/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/metadata/tests copying build/lib.linux-x86_64-3.8/skbio/metadata/tests/test_intersection.py -> build/bdist.linux-x86_64/wheel/skbio/metadata/tests copying build/lib.linux-x86_64-3.8/skbio/metadata/tests/test_mixin.py -> build/bdist.linux-x86_64/wheel/skbio/metadata/tests copying build/lib.linux-x86_64-3.8/skbio/metadata/tests/test_interval.py -> build/bdist.linux-x86_64/wheel/skbio/metadata/tests copying build/lib.linux-x86_64-3.8/skbio/metadata/_intersection.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/skbio/metadata copying build/lib.linux-x86_64-3.8/skbio/metadata/_mixin.py -> build/bdist.linux-x86_64/wheel/skbio/metadata copying build/lib.linux-x86_64-3.8/skbio/__init__.py -> build/bdist.linux-x86_64/wheel/skbio creating build/bdist.linux-x86_64/wheel/skbio/diversity copying build/lib.linux-x86_64-3.8/skbio/diversity/_block.py -> build/bdist.linux-x86_64/wheel/skbio/diversity creating build/bdist.linux-x86_64/wheel/skbio/diversity/alpha creating build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/test_chao1.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests creating build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests/data creating build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests/data/qiime-191-tt copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests/data/qiime-191-tt copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests/data/qiime-191-tt copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests/data/qiime-191-tt copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests/data/qiime-191-tt copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/test_gini.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/test_faith_pd.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/test_lladser.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/test_ace.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/tests/test_base.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/_chao1.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/_lladser.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/_gini.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/_faith_pd.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/_base.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha copying build/lib.linux-x86_64-3.8/skbio/diversity/alpha/_ace.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/alpha copying build/lib.linux-x86_64-3.8/skbio/diversity/_driver.py -> build/bdist.linux-x86_64/wheel/skbio/diversity copying build/lib.linux-x86_64-3.8/skbio/diversity/_phylogenetic.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/skbio/diversity creating build/bdist.linux-x86_64/wheel/skbio/diversity/beta copying build/lib.linux-x86_64-3.8/skbio/diversity/beta/_unifrac.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/beta copying build/lib.linux-x86_64-3.8/skbio/diversity/beta/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/beta creating build/bdist.linux-x86_64/wheel/skbio/diversity/beta/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/beta/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/test_unifrac.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/beta/tests creating build/bdist.linux-x86_64/wheel/skbio/diversity/beta/tests/data creating build/bdist.linux-x86_64/wheel/skbio/diversity/beta/tests/data/qiime-191-tt copying build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> build/bdist.linux-x86_64/wheel/skbio/diversity/beta/tests/data/qiime-191-tt copying build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> build/bdist.linux-x86_64/wheel/skbio/diversity/beta/tests/data/qiime-191-tt copying build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> build/bdist.linux-x86_64/wheel/skbio/diversity/beta/tests/data/qiime-191-tt copying build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> build/bdist.linux-x86_64/wheel/skbio/diversity/beta/tests/data/qiime-191-tt copying build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> build/bdist.linux-x86_64/wheel/skbio/diversity/beta/tests/data/qiime-191-tt copying build/lib.linux-x86_64-3.8/skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> build/bdist.linux-x86_64/wheel/skbio/diversity/beta/tests/data/qiime-191-tt creating build/bdist.linux-x86_64/wheel/skbio/diversity/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/tests/test_block.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/tests/test_driver.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/tests/test_util.py -> build/bdist.linux-x86_64/wheel/skbio/diversity/tests copying build/lib.linux-x86_64-3.8/skbio/diversity/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/diversity copying build/lib.linux-x86_64-3.8/skbio/diversity/_util.py -> build/bdist.linux-x86_64/wheel/skbio/diversity creating build/bdist.linux-x86_64/wheel/skbio/alignment copying build/lib.linux-x86_64-3.8/skbio/alignment/_indexing.py -> build/bdist.linux-x86_64/wheel/skbio/alignment copying build/lib.linux-x86_64-3.8/skbio/alignment/_repr.py -> build/bdist.linux-x86_64/wheel/skbio/alignment copying build/lib.linux-x86_64-3.8/skbio/alignment/_ssw_wrapper.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/skbio/alignment creating build/bdist.linux-x86_64/wheel/skbio/alignment/tests copying build/lib.linux-x86_64-3.8/skbio/alignment/tests/test_ssw.py -> build/bdist.linux-x86_64/wheel/skbio/alignment/tests copying build/lib.linux-x86_64-3.8/skbio/alignment/tests/test_tabular_msa.py -> build/bdist.linux-x86_64/wheel/skbio/alignment/tests copying build/lib.linux-x86_64-3.8/skbio/alignment/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/alignment/tests copying build/lib.linux-x86_64-3.8/skbio/alignment/tests/test_pairwise.py -> build/bdist.linux-x86_64/wheel/skbio/alignment/tests copying build/lib.linux-x86_64-3.8/skbio/alignment/_pairwise.py -> build/bdist.linux-x86_64/wheel/skbio/alignment creating build/bdist.linux-x86_64/wheel/skbio/alignment/_lib copying build/lib.linux-x86_64-3.8/skbio/alignment/_lib/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/alignment/_lib copying build/lib.linux-x86_64-3.8/skbio/alignment/_tabular_msa.py -> build/bdist.linux-x86_64/wheel/skbio/alignment copying build/lib.linux-x86_64-3.8/skbio/alignment/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/alignment creating build/bdist.linux-x86_64/wheel/skbio/stats copying build/lib.linux-x86_64-3.8/skbio/stats/power.py -> build/bdist.linux-x86_64/wheel/skbio/stats copying build/lib.linux-x86_64-3.8/skbio/stats/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/stats creating build/bdist.linux-x86_64/wheel/skbio/stats/evolve copying build/lib.linux-x86_64-3.8/skbio/stats/evolve/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/stats/evolve copying build/lib.linux-x86_64-3.8/skbio/stats/evolve/_hommola.py -> build/bdist.linux-x86_64/wheel/skbio/stats/evolve creating build/bdist.linux-x86_64/wheel/skbio/stats/evolve/tests copying build/lib.linux-x86_64-3.8/skbio/stats/evolve/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/stats/evolve/tests copying build/lib.linux-x86_64-3.8/skbio/stats/evolve/tests/test_hommola.py -> build/bdist.linux-x86_64/wheel/skbio/stats/evolve/tests copying build/lib.linux-x86_64-3.8/skbio/stats/_misc.py -> build/bdist.linux-x86_64/wheel/skbio/stats creating build/bdist.linux-x86_64/wheel/skbio/stats/ordination copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/_ordination_results.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/_utils.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination creating build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/test_ordination_results.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/test_util.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/test_correspondence_analysis.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/test_redundancy_analysis.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests creating build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example3_X -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/varespec.csv -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example2_X -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example2_Y -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/varechem.csv -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example3_Y -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/PCoA_skbio -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/PCoA_sample_data -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/L&L_CA_data -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/_redundancy_analysis.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/_correspondence_analysis.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination copying build/lib.linux-x86_64-3.8/skbio/stats/ordination/_principal_coordinate_analysis.py -> build/bdist.linux-x86_64/wheel/skbio/stats/ordination copying build/lib.linux-x86_64-3.8/skbio/stats/composition.py -> build/bdist.linux-x86_64/wheel/skbio/stats copying build/lib.linux-x86_64-3.8/skbio/stats/gradient.py -> build/bdist.linux-x86_64/wheel/skbio/stats copying build/lib.linux-x86_64-3.8/skbio/stats/_subsample.py -> build/bdist.linux-x86_64/wheel/skbio/stats creating build/bdist.linux-x86_64/wheel/skbio/stats/tests copying build/lib.linux-x86_64-3.8/skbio/stats/tests/test_misc.py -> build/bdist.linux-x86_64/wheel/skbio/stats/tests copying build/lib.linux-x86_64-3.8/skbio/stats/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/stats/tests copying build/lib.linux-x86_64-3.8/skbio/stats/tests/test_composition.py -> build/bdist.linux-x86_64/wheel/skbio/stats/tests copying build/lib.linux-x86_64-3.8/skbio/stats/tests/test_subsample.py -> build/bdist.linux-x86_64/wheel/skbio/stats/tests creating build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/data/cr_no_data_raw -> build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/data/gr_wo_msg_raw -> build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/data/gr_w_msg_out -> build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/data/vr_real_out -> build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/data/vr_out -> build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/data/cr_data_out -> build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/data/vr_real_raw -> build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/data/vr_raw -> build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/data/cr_data_raw -> build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/data/gr_wo_msg_out -> build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/data/cr_no_data_out -> build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/data/gr_w_msg_raw -> build/bdist.linux-x86_64/wheel/skbio/stats/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/tests/test_power.py -> build/bdist.linux-x86_64/wheel/skbio/stats/tests copying build/lib.linux-x86_64-3.8/skbio/stats/tests/test_gradient.py -> build/bdist.linux-x86_64/wheel/skbio/stats/tests creating build/bdist.linux-x86_64/wheel/skbio/stats/distance copying build/lib.linux-x86_64-3.8/skbio/stats/distance/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance copying build/lib.linux-x86_64-3.8/skbio/stats/distance/_anosim.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance copying build/lib.linux-x86_64-3.8/skbio/stats/distance/_mantel.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance copying build/lib.linux-x86_64-3.8/skbio/stats/distance/_base.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance copying build/lib.linux-x86_64-3.8/skbio/stats/distance/_bioenv.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance creating build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/test_permanova.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/test_permdisp.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests creating build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/dm.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/df_extra_column.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/dm_reordered.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/df.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/dm2.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/exp_results.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/dm3.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/dm4.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests/data copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/test_base.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/test_mantel.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/test_bioenv.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/test_anosim.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests copying build/lib.linux-x86_64-3.8/skbio/stats/distance/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance/tests copying build/lib.linux-x86_64-3.8/skbio/stats/distance/_permdisp.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance copying build/lib.linux-x86_64-3.8/skbio/stats/distance/_permanova.py -> build/bdist.linux-x86_64/wheel/skbio/stats/distance copying build/lib.linux-x86_64-3.8/skbio/stats/__subsample.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/skbio/stats copying build/lib.linux-x86_64-3.8/skbio/_base.py -> build/bdist.linux-x86_64/wheel/skbio creating build/bdist.linux-x86_64/wheel/skbio/util copying build/lib.linux-x86_64-3.8/skbio/util/_misc.py -> build/bdist.linux-x86_64/wheel/skbio/util copying build/lib.linux-x86_64-3.8/skbio/util/_decorator.py -> build/bdist.linux-x86_64/wheel/skbio/util copying build/lib.linux-x86_64-3.8/skbio/util/_exception.py -> build/bdist.linux-x86_64/wheel/skbio/util copying build/lib.linux-x86_64-3.8/skbio/util/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/util copying build/lib.linux-x86_64-3.8/skbio/util/_warning.py -> build/bdist.linux-x86_64/wheel/skbio/util creating build/bdist.linux-x86_64/wheel/skbio/util/tests copying build/lib.linux-x86_64-3.8/skbio/util/tests/test_testing.py -> build/bdist.linux-x86_64/wheel/skbio/util/tests copying build/lib.linux-x86_64-3.8/skbio/util/tests/test_decorator.py -> build/bdist.linux-x86_64/wheel/skbio/util/tests copying build/lib.linux-x86_64-3.8/skbio/util/tests/test_misc.py -> build/bdist.linux-x86_64/wheel/skbio/util/tests copying build/lib.linux-x86_64-3.8/skbio/util/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/util/tests copying build/lib.linux-x86_64-3.8/skbio/util/_testing.py -> build/bdist.linux-x86_64/wheel/skbio/util creating build/bdist.linux-x86_64/wheel/skbio/tree copying build/lib.linux-x86_64-3.8/skbio/tree/_majority_rule.py -> build/bdist.linux-x86_64/wheel/skbio/tree copying build/lib.linux-x86_64-3.8/skbio/tree/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/tree copying build/lib.linux-x86_64-3.8/skbio/tree/_tree.py -> build/bdist.linux-x86_64/wheel/skbio/tree copying build/lib.linux-x86_64-3.8/skbio/tree/_exception.py -> build/bdist.linux-x86_64/wheel/skbio/tree copying build/lib.linux-x86_64-3.8/skbio/tree/_nj.py -> build/bdist.linux-x86_64/wheel/skbio/tree creating build/bdist.linux-x86_64/wheel/skbio/tree/tests copying build/lib.linux-x86_64-3.8/skbio/tree/tests/test_tree.py -> build/bdist.linux-x86_64/wheel/skbio/tree/tests copying build/lib.linux-x86_64-3.8/skbio/tree/tests/test_majority_rule.py -> build/bdist.linux-x86_64/wheel/skbio/tree/tests copying build/lib.linux-x86_64-3.8/skbio/tree/tests/test_nj.py -> build/bdist.linux-x86_64/wheel/skbio/tree/tests copying build/lib.linux-x86_64-3.8/skbio/tree/tests/__init__.py -> build/bdist.linux-x86_64/wheel/skbio/tree/tests running install_egg_info running egg_info writing scikit_bio.egg-info/PKG-INFO writing dependency_links to scikit_bio.egg-info/dependency_links.txt writing requirements to scikit_bio.egg-info/requires.txt writing top-level names to scikit_bio.egg-info/top_level.txt reading manifest file 'scikit_bio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'doc/build' no previously-included directories found matching 'doc/source/generated' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution warning: no previously-included files matching '.coverage' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'scikit_bio.egg-info/SOURCES.txt' Copying scikit_bio.egg-info to build/bdist.linux-x86_64/wheel/scikit_bio-0.5.6-py3.8.egg-info running install_scripts adding license file "COPYING.txt" (matched pattern "COPYING*") creating build/bdist.linux-x86_64/wheel/scikit_bio-0.5.6.dist-info/WHEEL creating 'dist/scikit_bio-0.5.6-cp38-cp38-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'benchmarks/__init__.py' adding 'benchmarks/benchmarks.py' adding 'skbio/__init__.py' adding 'skbio/_base.py' adding 'skbio/test.py' adding 'skbio/workflow.py' adding 'skbio/alignment/__init__.py' adding 'skbio/alignment/_indexing.py' adding 'skbio/alignment/_pairwise.py' adding 'skbio/alignment/_repr.py' adding 'skbio/alignment/_ssw_wrapper.cpython-38-x86_64-linux-gnu.so' adding 'skbio/alignment/_tabular_msa.py' adding 'skbio/alignment/_lib/__init__.py' adding 'skbio/alignment/tests/__init__.py' adding 'skbio/alignment/tests/test_pairwise.py' adding 'skbio/alignment/tests/test_ssw.py' adding 'skbio/alignment/tests/test_tabular_msa.py' adding 'skbio/diversity/__init__.py' adding 'skbio/diversity/_block.py' adding 'skbio/diversity/_driver.py' adding 'skbio/diversity/_phylogenetic.cpython-38-x86_64-linux-gnu.so' adding 'skbio/diversity/_util.py' adding 'skbio/diversity/alpha/__init__.py' adding 'skbio/diversity/alpha/_ace.py' adding 'skbio/diversity/alpha/_base.py' adding 'skbio/diversity/alpha/_chao1.py' adding 'skbio/diversity/alpha/_faith_pd.py' adding 'skbio/diversity/alpha/_gini.py' adding 'skbio/diversity/alpha/_lladser.py' adding 'skbio/diversity/alpha/tests/__init__.py' adding 'skbio/diversity/alpha/tests/test_ace.py' adding 'skbio/diversity/alpha/tests/test_base.py' adding 'skbio/diversity/alpha/tests/test_chao1.py' adding 'skbio/diversity/alpha/tests/test_faith_pd.py' adding 'skbio/diversity/alpha/tests/test_gini.py' adding 'skbio/diversity/alpha/tests/test_lladser.py' adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/README.md' adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt' adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv' adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk' adding 'skbio/diversity/beta/__init__.py' adding 'skbio/diversity/beta/_unifrac.py' adding 'skbio/diversity/beta/tests/__init__.py' adding 'skbio/diversity/beta/tests/test_unifrac.py' adding 'skbio/diversity/beta/tests/data/qiime-191-tt/README.md' adding 'skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv' adding 'skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk' adding 'skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt' adding 'skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt' adding 'skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt' adding 'skbio/diversity/tests/__init__.py' adding 'skbio/diversity/tests/test_block.py' adding 'skbio/diversity/tests/test_driver.py' adding 'skbio/diversity/tests/test_util.py' adding 'skbio/io/__init__.py' adding 'skbio/io/_exception.py' adding 'skbio/io/_fileobject.py' adding 'skbio/io/_iosources.py' adding 'skbio/io/_warning.py' adding 'skbio/io/registry.py' adding 'skbio/io/util.py' adding 'skbio/io/format/__init__.py' adding 'skbio/io/format/_base.py' adding 'skbio/io/format/_blast.py' adding 'skbio/io/format/_sequence_feature_vocabulary.py' adding 'skbio/io/format/blast6.py' adding 'skbio/io/format/blast7.py' adding 'skbio/io/format/clustal.py' adding 'skbio/io/format/embl.py' adding 'skbio/io/format/emptyfile.py' adding 'skbio/io/format/fasta.py' adding 'skbio/io/format/fastq.py' adding 'skbio/io/format/genbank.py' adding 'skbio/io/format/gff3.py' adding 'skbio/io/format/lsmat.py' adding 'skbio/io/format/newick.py' adding 'skbio/io/format/ordination.py' adding 'skbio/io/format/phylip.py' adding 'skbio/io/format/qseq.py' adding 'skbio/io/format/stockholm.py' adding 'skbio/io/format/tests/__init__.py' adding 'skbio/io/format/tests/test_base.py' adding 'skbio/io/format/tests/test_blast6.py' adding 'skbio/io/format/tests/test_blast7.py' adding 'skbio/io/format/tests/test_clustal.py' adding 'skbio/io/format/tests/test_embl.py' adding 'skbio/io/format/tests/test_emptyfile.py' adding 'skbio/io/format/tests/test_fasta.py' adding 'skbio/io/format/tests/test_fastq.py' adding 'skbio/io/format/tests/test_genbank.py' adding 'skbio/io/format/tests/test_gff3.py' adding 'skbio/io/format/tests/test_lsmat.py' adding 'skbio/io/format/tests/test_newick.py' adding 'skbio/io/format/tests/test_ordination.py' adding 'skbio/io/format/tests/test_phylip.py' adding 'skbio/io/format/tests/test_qseq.py' adding 'skbio/io/format/tests/test_sequence_feature_vocabulary.py' adding 'skbio/io/format/tests/test_stockholm.py' adding 'skbio/io/format/tests/data/blast6_custom_minimal' adding 'skbio/io/format/tests/data/blast6_custom_mixed_nans' adding 'skbio/io/format/tests/data/blast6_custom_multi_line' adding 'skbio/io/format/tests/data/blast6_custom_single_line' adding 'skbio/io/format/tests/data/blast6_default_multi_line' adding 'skbio/io/format/tests/data/blast6_default_single_line' adding 'skbio/io/format/tests/data/blast6_invalid_column_types' adding 'skbio/io/format/tests/data/blast6_invalid_number_of_columns' adding 'skbio/io/format/tests/data/blast6_invalid_type_in_column' adding 'skbio/io/format/tests/data/blast7_custom_minimal' adding 'skbio/io/format/tests/data/blast7_custom_mixed_nans' adding 'skbio/io/format/tests/data/blast7_custom_multi_line' adding 'skbio/io/format/tests/data/blast7_custom_single_line' adding 'skbio/io/format/tests/data/blast7_default_multi_line' adding 'skbio/io/format/tests/data/blast7_default_single_line' adding 'skbio/io/format/tests/data/blast7_invalid_differing_fields' adding 'skbio/io/format/tests/data/blast7_invalid_for_sniffer' adding 'skbio/io/format/tests/data/blast7_invalid_for_sniffer_2' adding 'skbio/io/format/tests/data/blast7_invalid_gibberish' adding 'skbio/io/format/tests/data/blast7_invalid_no_data' adding 'skbio/io/format/tests/data/blast7_invalid_too_many_columns' adding 'skbio/io/format/tests/data/blast7_invalid_unrecognized_field' adding 'skbio/io/format/tests/data/embl_constructed' adding 'skbio/io/format/tests/data/embl_feature_level_record' adding 'skbio/io/format/tests/data/embl_feature_level_record_no_FT' adding 'skbio/io/format/tests/data/embl_multi_records' adding 'skbio/io/format/tests/data/embl_single_record' adding 'skbio/io/format/tests/data/embl_single_record_lower' adding 'skbio/io/format/tests/data/embl_single_record_simple' adding 'skbio/io/format/tests/data/embl_single_record_upper' adding 'skbio/io/format/tests/data/embl_uniprot_record' adding 'skbio/io/format/tests/data/embl_w_beginning_whitespace' adding 'skbio/io/format/tests/data/empty' adding 'skbio/io/format/tests/data/error_diff_ids.fastq' adding 'skbio/io/format/tests/data/error_double_qual.fastq' adding 'skbio/io/format/tests/data/error_double_seq.fastq' adding 'skbio/io/format/tests/data/error_long_qual.fastq' adding 'skbio/io/format/tests/data/error_no_qual.fastq' adding 'skbio/io/format/tests/data/error_qual_del.fastq' adding 'skbio/io/format/tests/data/error_qual_escape.fastq' adding 'skbio/io/format/tests/data/error_qual_null.fastq' adding 'skbio/io/format/tests/data/error_qual_space.fastq' adding 'skbio/io/format/tests/data/error_qual_tab.fastq' adding 'skbio/io/format/tests/data/error_qual_unit_sep.fastq' adding 'skbio/io/format/tests/data/error_qual_vtab.fastq' adding 'skbio/io/format/tests/data/error_short_qual.fastq' adding 'skbio/io/format/tests/data/error_spaces.fastq' adding 'skbio/io/format/tests/data/error_tabs.fastq' adding 'skbio/io/format/tests/data/error_trunc_at_plus.fastq' adding 'skbio/io/format/tests/data/error_trunc_at_qual.fastq' adding 'skbio/io/format/tests/data/error_trunc_at_seq.fastq' adding 'skbio/io/format/tests/data/error_trunc_in_plus.fastq' adding 'skbio/io/format/tests/data/error_trunc_in_qual.fastq' adding 'skbio/io/format/tests/data/error_trunc_in_seq.fastq' adding 'skbio/io/format/tests/data/error_trunc_in_title.fastq' adding 'skbio/io/format/tests/data/fasta_10_seqs' adding 'skbio/io/format/tests/data/fasta_3_seqs_defaults' adding 'skbio/io/format/tests/data/fasta_3_seqs_non_defaults' adding 'skbio/io/format/tests/data/fasta_5_blanks_start_of_file' adding 'skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file' adding 'skbio/io/format/tests/data/fasta_6_blanks_start_of_file' adding 'skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file' adding 'skbio/io/format/tests/data/fasta_blank_lines_between_records' adding 'skbio/io/format/tests/data/fasta_blanks_end_of_file' adding 'skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str' adding 'skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char' adding 'skbio/io/format/tests/data/fasta_description_newline_replacement_none' adding 'skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str' adding 'skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char' adding 'skbio/io/format/tests/data/fasta_id_whitespace_replacement_none' adding 'skbio/io/format/tests/data/fasta_invalid_after_10_seqs' adding 'skbio/io/format/tests/data/fasta_invalid_blank_line_after_header' adding 'skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence' adding 'skbio/io/format/tests/data/fasta_invalid_blank_sequence' adding 'skbio/io/format/tests/data/fasta_invalid_legacy_format' adding 'skbio/io/format/tests/data/fasta_invalid_missing_header' adding 'skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first' adding 'skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last' adding 'skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle' adding 'skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header' adding 'skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence' adding 'skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence' adding 'skbio/io/format/tests/data/fasta_max_width_1' adding 'skbio/io/format/tests/data/fasta_max_width_5' adding 'skbio/io/format/tests/data/fasta_mixed_qual_scores' adding 'skbio/io/format/tests/data/fasta_multi_seq' adding 'skbio/io/format/tests/data/fasta_multi_seq_roundtrip' adding 'skbio/io/format/tests/data/fasta_prot_seqs_odd_labels' adding 'skbio/io/format/tests/data/fasta_single_bio_seq_defaults' adding 'skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults' adding 'skbio/io/format/tests/data/fasta_single_dna_seq_defaults' adding 'skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults' adding 'skbio/io/format/tests/data/fasta_single_prot_seq_defaults' adding 'skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults' adding 'skbio/io/format/tests/data/fasta_single_rna_seq_defaults' adding 'skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults' adding 'skbio/io/format/tests/data/fasta_single_seq' adding 'skbio/io/format/tests/data/fasta_tabular_msa_different_type' adding 'skbio/io/format/tests/data/fasta_ws_lines_between_records' adding 'skbio/io/format/tests/data/fasta_ws_lines_end_of_file' adding 'skbio/io/format/tests/data/fastq_5_blanks_start_of_file' adding 'skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file' adding 'skbio/io/format/tests/data/fastq_blank_lines' adding 'skbio/io/format/tests/data/fastq_invalid_blank_after_header' adding 'skbio/io/format/tests/data/fastq_invalid_blank_after_plus' adding 'skbio/io/format/tests/data/fastq_invalid_blank_after_seq' adding 'skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol' adding 'skbio/io/format/tests/data/fastq_invalid_blank_within_qual' adding 'skbio/io/format/tests/data/fastq_invalid_blank_within_seq' adding 'skbio/io/format/tests/data/fastq_invalid_missing_header' adding 'skbio/io/format/tests/data/fastq_invalid_missing_seq_data' adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_after_header' adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus' adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq' adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual' adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq' adding 'skbio/io/format/tests/data/fastq_multi_blank_between_records' adding 'skbio/io/format/tests/data/fastq_multi_blank_end_of_file' adding 'skbio/io/format/tests/data/fastq_multi_blank_start_of_file' adding 'skbio/io/format/tests/data/fastq_multi_seq_sanger' adding 'skbio/io/format/tests/data/fastq_multi_whitespace_stripping' adding 'skbio/io/format/tests/data/fastq_multi_ws_lines_between_records' adding 'skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file' adding 'skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file' adding 'skbio/io/format/tests/data/fastq_single_seq_illumina1.3' adding 'skbio/io/format/tests/data/fastq_single_seq_illumina1.8' adding 'skbio/io/format/tests/data/fastq_whitespace_only_lines' adding 'skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description' adding 'skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description' adding 'skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description' adding 'skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults' adding 'skbio/io/format/tests/data/fastq_writer_sanger_defaults' adding 'skbio/io/format/tests/data/fastq_writer_sanger_non_defaults' adding 'skbio/io/format/tests/data/genbank_5_blanks_start_of_file' adding 'skbio/io/format/tests/data/genbank_6_blanks_start_of_file' adding 'skbio/io/format/tests/data/genbank_missing_locus_name' adding 'skbio/io/format/tests/data/genbank_multi_records' adding 'skbio/io/format/tests/data/genbank_single_record' adding 'skbio/io/format/tests/data/genbank_single_record_lower' adding 'skbio/io/format/tests/data/genbank_single_record_upper' adding 'skbio/io/format/tests/data/genbank_w_beginning_whitespace' adding 'skbio/io/format/tests/data/gff3_bad_missing_directive' adding 'skbio/io/format/tests/data/gff3_bad_wrong_columns' adding 'skbio/io/format/tests/data/gff3_dna' adding 'skbio/io/format/tests/data/gff3_multi_record' adding 'skbio/io/format/tests/data/gff3_single_record' adding 'skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq' adding 'skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq' adding 'skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq' adding 'skbio/io/format/tests/data/legacy9_and_blast7_default' adding 'skbio/io/format/tests/data/legacy9_invalid_differing_fields' adding 'skbio/io/format/tests/data/legacy9_invalid_too_many_columns' adding 'skbio/io/format/tests/data/legacy9_mixed_nans' adding 'skbio/io/format/tests/data/legacy9_multi_line' adding 'skbio/io/format/tests/data/legacy9_single_line' adding 'skbio/io/format/tests/data/longreads_as_illumina.fastq' adding 'skbio/io/format/tests/data/longreads_as_sanger.fastq' adding 'skbio/io/format/tests/data/longreads_original_sanger.fastq' adding 'skbio/io/format/tests/data/misc_dna_as_illumina.fastq' adding 'skbio/io/format/tests/data/misc_dna_as_sanger.fastq' adding 'skbio/io/format/tests/data/misc_dna_original_sanger.fastq' adding 'skbio/io/format/tests/data/misc_rna_as_illumina.fastq' adding 'skbio/io/format/tests/data/misc_rna_as_sanger.fastq' adding 'skbio/io/format/tests/data/misc_rna_original_sanger.fastq' adding 'skbio/io/format/tests/data/ordination_L&L_CA_data_scores' adding 'skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores' adding 'skbio/io/format/tests/data/ordination_error1' adding 'skbio/io/format/tests/data/ordination_error10' adding 'skbio/io/format/tests/data/ordination_error11' adding 'skbio/io/format/tests/data/ordination_error12' adding 'skbio/io/format/tests/data/ordination_error13' adding 'skbio/io/format/tests/data/ordination_error14' adding 'skbio/io/format/tests/data/ordination_error15' adding 'skbio/io/format/tests/data/ordination_error16' adding 'skbio/io/format/tests/data/ordination_error17' adding 'skbio/io/format/tests/data/ordination_error18' adding 'skbio/io/format/tests/data/ordination_error19' adding 'skbio/io/format/tests/data/ordination_error2' adding 'skbio/io/format/tests/data/ordination_error20' adding 'skbio/io/format/tests/data/ordination_error21' adding 'skbio/io/format/tests/data/ordination_error22' adding 'skbio/io/format/tests/data/ordination_error23' adding 'skbio/io/format/tests/data/ordination_error24' adding 'skbio/io/format/tests/data/ordination_error3' adding 'skbio/io/format/tests/data/ordination_error4' adding 'skbio/io/format/tests/data/ordination_error5' adding 'skbio/io/format/tests/data/ordination_error6' adding 'skbio/io/format/tests/data/ordination_error7' adding 'skbio/io/format/tests/data/ordination_error8' adding 'skbio/io/format/tests/data/ordination_error9' adding 'skbio/io/format/tests/data/ordination_example2_scores' adding 'skbio/io/format/tests/data/ordination_example3_scores' adding 'skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site' adding 'skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints' adding 'skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species' adding 'skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site' adding 'skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site' adding 'skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints' adding 'skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species' adding 'skbio/io/format/tests/data/phylip_dna_3_seqs' adding 'skbio/io/format/tests/data/phylip_invalid_empty_line_after_header' adding 'skbio/io/format/tests/data/phylip_invalid_empty_line_before_header' adding 'skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs' adding 'skbio/io/format/tests/data/phylip_invalid_header_too_long' adding 'skbio/io/format/tests/data/phylip_invalid_header_too_short' adding 'skbio/io/format/tests/data/phylip_invalid_no_header' adding 'skbio/io/format/tests/data/phylip_invalid_seq_too_long' adding 'skbio/io/format/tests/data/phylip_invalid_seq_too_short' adding 'skbio/io/format/tests/data/phylip_invalid_too_few_seqs' adding 'skbio/io/format/tests/data/phylip_invalid_too_many_seqs' adding 'skbio/io/format/tests/data/phylip_invalid_zero_seq_len' adding 'skbio/io/format/tests/data/phylip_invalid_zero_seqs' adding 'skbio/io/format/tests/data/phylip_single_seq_long' adding 'skbio/io/format/tests/data/phylip_single_seq_short' adding 'skbio/io/format/tests/data/phylip_two_chunks' adding 'skbio/io/format/tests/data/phylip_variable_length_ids' adding 'skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs' adding 'skbio/io/format/tests/data/phylip_whitespace_in_header_1' adding 'skbio/io/format/tests/data/phylip_whitespace_in_header_2' adding 'skbio/io/format/tests/data/phylip_whitespace_in_header_3' adding 'skbio/io/format/tests/data/qseq_invalid_filter' adding 'skbio/io/format/tests/data/qseq_invalid_lane' adding 'skbio/io/format/tests/data/qseq_invalid_read' adding 'skbio/io/format/tests/data/qseq_invalid_tile' adding 'skbio/io/format/tests/data/qseq_invalid_x' adding 'skbio/io/format/tests/data/qseq_invalid_y' adding 'skbio/io/format/tests/data/qseq_multi_seq_illumina1.3' adding 'skbio/io/format/tests/data/qseq_single_seq_sanger' adding 'skbio/io/format/tests/data/qual_2_seqs_defaults' adding 'skbio/io/format/tests/data/qual_3_seqs_defaults' adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch' adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_extra' adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch' adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch' adding 'skbio/io/format/tests/data/qual_3_seqs_non_defaults' adding 'skbio/io/format/tests/data/qual_5_blanks_start_of_file' adding 'skbio/io/format/tests/data/qual_5_ws_lines_start_of_file' adding 'skbio/io/format/tests/data/qual_6_blanks_start_of_file' adding 'skbio/io/format/tests/data/qual_6_ws_lines_start_of_file' adding 'skbio/io/format/tests/data/qual_blank_lines_between_records' adding 'skbio/io/format/tests/data/qual_blanks_end_of_file' adding 'skbio/io/format/tests/data/qual_description_newline_replacement_empty_str' adding 'skbio/io/format/tests/data/qual_description_newline_replacement_multi_char' adding 'skbio/io/format/tests/data/qual_description_newline_replacement_none' adding 'skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str' adding 'skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char' adding 'skbio/io/format/tests/data/qual_id_whitespace_replacement_none' adding 'skbio/io/format/tests/data/qual_invalid_blank_line_after_header' adding 'skbio/io/format/tests/data/qual_invalid_blank_line_within_seq' adding 'skbio/io/format/tests/data/qual_invalid_blank_sequence' adding 'skbio/io/format/tests/data/qual_invalid_legacy_format' adding 'skbio/io/format/tests/data/qual_invalid_missing_header' adding 'skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first' adding 'skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last' adding 'skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle' adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_float' adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_negative' adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_over_255' adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_string' adding 'skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq' adding 'skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence' adding 'skbio/io/format/tests/data/qual_invalid_ws_line_after_header' adding 'skbio/io/format/tests/data/qual_max_width_1' adding 'skbio/io/format/tests/data/qual_max_width_5' adding 'skbio/io/format/tests/data/qual_multi_seq' adding 'skbio/io/format/tests/data/qual_multi_seq_roundtrip' adding 'skbio/io/format/tests/data/qual_prot_seqs_odd_labels' adding 'skbio/io/format/tests/data/qual_single_bio_seq_non_defaults' adding 'skbio/io/format/tests/data/qual_single_dna_seq_non_defaults' adding 'skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults' adding 'skbio/io/format/tests/data/qual_single_prot_seq_non_defaults' adding 'skbio/io/format/tests/data/qual_single_rna_seq_non_defaults' adding 'skbio/io/format/tests/data/qual_single_seq' adding 'skbio/io/format/tests/data/qual_tabular_msa_different_type' adding 'skbio/io/format/tests/data/qual_ws_lines_between_records' adding 'skbio/io/format/tests/data/qual_ws_lines_end_of_file' adding 'skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq' adding 'skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq' adding 'skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq' adding 'skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq' adding 'skbio/io/format/tests/data/stockholm_all_data_types' adding 'skbio/io/format/tests/data/stockholm_blank_lines' adding 'skbio/io/format/tests/data/stockholm_data_only' adding 'skbio/io/format/tests/data/stockholm_different_padding' adding 'skbio/io/format/tests/data/stockholm_differing_gc_data_length' adding 'skbio/io/format/tests/data/stockholm_differing_gr_data_length' adding 'skbio/io/format/tests/data/stockholm_differing_seq_lengths' adding 'skbio/io/format/tests/data/stockholm_duplicate_gc' adding 'skbio/io/format/tests/data/stockholm_duplicate_gr' adding 'skbio/io/format/tests/data/stockholm_duplicate_sequence_names' adding 'skbio/io/format/tests/data/stockholm_duplicate_tree_ids' adding 'skbio/io/format/tests/data/stockholm_extensive' adding 'skbio/io/format/tests/data/stockholm_extensive_mixed' adding 'skbio/io/format/tests/data/stockholm_invalid_data_type' adding 'skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr' adding 'skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs' adding 'skbio/io/format/tests/data/stockholm_malformed_data_line' adding 'skbio/io/format/tests/data/stockholm_malformed_gc_line' adding 'skbio/io/format/tests/data/stockholm_malformed_gf_line' adding 'skbio/io/format/tests/data/stockholm_malformed_gr_line' adding 'skbio/io/format/tests/data/stockholm_malformed_gs_line' adding 'skbio/io/format/tests/data/stockholm_metadata_only' adding 'skbio/io/format/tests/data/stockholm_minimal' adding 'skbio/io/format/tests/data/stockholm_missing_footer' adding 'skbio/io/format/tests/data/stockholm_missing_header' adding 'skbio/io/format/tests/data/stockholm_missing_reference_items' adding 'skbio/io/format/tests/data/stockholm_missing_rn_tag' adding 'skbio/io/format/tests/data/stockholm_multi_line_tree_no_id' adding 'skbio/io/format/tests/data/stockholm_multi_line_tree_with_id' adding 'skbio/io/format/tests/data/stockholm_multiple_msa' adding 'skbio/io/format/tests/data/stockholm_multiple_multi_line_trees' adding 'skbio/io/format/tests/data/stockholm_multiple_references' adding 'skbio/io/format/tests/data/stockholm_multiple_trees' adding 'skbio/io/format/tests/data/stockholm_no_data' adding 'skbio/io/format/tests/data/stockholm_nonstring_labels' adding 'skbio/io/format/tests/data/stockholm_rna' adding 'skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace' adding 'skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace' adding 'skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace' adding 'skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace' adding 'skbio/io/format/tests/data/stockholm_runon_references' adding 'skbio/io/format/tests/data/stockholm_runon_references_mixed' adding 'skbio/io/format/tests/data/stockholm_single_reference' adding 'skbio/io/format/tests/data/stockholm_single_tree_with_id' adding 'skbio/io/format/tests/data/stockholm_single_tree_without_id' adding 'skbio/io/format/tests/data/stockholm_two_of_each_metadata' adding 'skbio/io/format/tests/data/stockholm_whitespace_only_lines' adding 'skbio/io/format/tests/data/tsv_10_fields' adding 'skbio/io/format/tests/data/tsv_8_fields' adding 'skbio/io/format/tests/data/whitespace_only' adding 'skbio/io/format/tests/data/wrapping_as_illumina.fastq' adding 'skbio/io/format/tests/data/wrapping_as_sanger.fastq' adding 'skbio/io/format/tests/data/wrapping_original_sanger.fastq' adding 'skbio/io/tests/__init__.py' adding 'skbio/io/tests/test_iosources.py' adding 'skbio/io/tests/test_registry.py' adding 'skbio/io/tests/test_util.py' adding 'skbio/io/tests/data/big5_file' adding 'skbio/io/tests/data/big5_file.bz2' adding 'skbio/io/tests/data/big5_file.gz' adding 'skbio/io/tests/data/example_file' adding 'skbio/io/tests/data/example_file.bz2' adding 'skbio/io/tests/data/example_file.gz' adding 'skbio/io/tests/data/real_file' adding 'skbio/io/tests/data/real_file_2' adding 'skbio/metadata/__init__.py' adding 'skbio/metadata/_intersection.cpython-38-x86_64-linux-gnu.so' adding 'skbio/metadata/_interval.py' adding 'skbio/metadata/_mixin.py' adding 'skbio/metadata/_repr.py' adding 'skbio/metadata/_testing.py' adding 'skbio/metadata/tests/__init__.py' adding 'skbio/metadata/tests/test_intersection.py' adding 'skbio/metadata/tests/test_interval.py' adding 'skbio/metadata/tests/test_mixin.py' adding 'skbio/sequence/__init__.py' adding 'skbio/sequence/_dna.py' adding 'skbio/sequence/_genetic_code.py' adding 'skbio/sequence/_grammared_sequence.py' adding 'skbio/sequence/_nucleotide_mixin.py' adding 'skbio/sequence/_protein.py' adding 'skbio/sequence/_repr.py' adding 'skbio/sequence/_rna.py' adding 'skbio/sequence/_sequence.py' adding 'skbio/sequence/distance.py' adding 'skbio/sequence/tests/__init__.py' adding 'skbio/sequence/tests/test_distance.py' adding 'skbio/sequence/tests/test_dna.py' adding 'skbio/sequence/tests/test_genetic_code.py' adding 'skbio/sequence/tests/test_grammared_sequence.py' adding 'skbio/sequence/tests/test_nucleotide_sequences.py' adding 'skbio/sequence/tests/test_protein.py' adding 'skbio/sequence/tests/test_rna.py' adding 'skbio/sequence/tests/test_sequence.py' adding 'skbio/stats/__init__.py' adding 'skbio/stats/__subsample.cpython-38-x86_64-linux-gnu.so' adding 'skbio/stats/_misc.py' adding 'skbio/stats/_subsample.py' adding 'skbio/stats/composition.py' adding 'skbio/stats/gradient.py' adding 'skbio/stats/power.py' adding 'skbio/stats/distance/__init__.py' adding 'skbio/stats/distance/_anosim.py' adding 'skbio/stats/distance/_base.py' adding 'skbio/stats/distance/_bioenv.py' adding 'skbio/stats/distance/_mantel.py' adding 'skbio/stats/distance/_permanova.py' adding 'skbio/stats/distance/_permdisp.py' adding 'skbio/stats/distance/tests/__init__.py' adding 'skbio/stats/distance/tests/test_anosim.py' adding 'skbio/stats/distance/tests/test_base.py' adding 'skbio/stats/distance/tests/test_bioenv.py' adding 'skbio/stats/distance/tests/test_mantel.py' adding 'skbio/stats/distance/tests/test_permanova.py' adding 'skbio/stats/distance/tests/test_permdisp.py' adding 'skbio/stats/distance/tests/data/bioenv_df_vegan.txt' adding 'skbio/stats/distance/tests/data/bioenv_dm_vegan.txt' adding 'skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt' adding 'skbio/stats/distance/tests/data/df.txt' adding 'skbio/stats/distance/tests/data/df_extra_column.txt' adding 'skbio/stats/distance/tests/data/dm.txt' adding 'skbio/stats/distance/tests/data/dm2.txt' adding 'skbio/stats/distance/tests/data/dm3.txt' adding 'skbio/stats/distance/tests/data/dm4.txt' adding 'skbio/stats/distance/tests/data/dm_reordered.txt' adding 'skbio/stats/distance/tests/data/exp_results.txt' adding 'skbio/stats/distance/tests/data/exp_results_different_column_order.txt' adding 'skbio/stats/distance/tests/data/exp_results_single_column.txt' adding 'skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt' adding 'skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt' adding 'skbio/stats/distance/tests/data/moving_pictures_dm.tsv' adding 'skbio/stats/distance/tests/data/moving_pictures_mf.tsv' adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt' adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt' adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt' adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt' adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt' adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt' adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt' adding 'skbio/stats/evolve/__init__.py' adding 'skbio/stats/evolve/_hommola.py' adding 'skbio/stats/evolve/tests/__init__.py' adding 'skbio/stats/evolve/tests/test_hommola.py' adding 'skbio/stats/ordination/__init__.py' adding 'skbio/stats/ordination/_canonical_correspondence_analysis.py' adding 'skbio/stats/ordination/_correspondence_analysis.py' adding 'skbio/stats/ordination/_ordination_results.py' adding 'skbio/stats/ordination/_principal_coordinate_analysis.py' adding 'skbio/stats/ordination/_redundancy_analysis.py' adding 'skbio/stats/ordination/_utils.py' adding 'skbio/stats/ordination/tests/__init__.py' adding 'skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py' adding 'skbio/stats/ordination/tests/test_correspondence_analysis.py' adding 'skbio/stats/ordination/tests/test_ordination_results.py' adding 'skbio/stats/ordination/tests/test_principal_coordinate_analysis.py' adding 'skbio/stats/ordination/tests/test_redundancy_analysis.py' adding 'skbio/stats/ordination/tests/test_util.py' adding 'skbio/stats/ordination/tests/data/L&L_CA_data' adding 'skbio/stats/ordination/tests/data/PCoA_biplot_descriptors' adding 'skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors' adding 'skbio/stats/ordination/tests/data/PCoA_sample_data' adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_12dim' adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_2' adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_3' adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim' adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim' adding 'skbio/stats/ordination/tests/data/PCoA_skbio' adding 'skbio/stats/ordination/tests/data/example2_X' adding 'skbio/stats/ordination/tests/data/example2_Y' adding 'skbio/stats/ordination/tests/data/example2_biplot_scaling1' adding 'skbio/stats/ordination/tests/data/example2_biplot_scaling2' adding 'skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1' adding 'skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2' adding 'skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan' adding 'skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan' adding 'skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan' adding 'skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan' adding 'skbio/stats/ordination/tests/data/example3_X' adding 'skbio/stats/ordination/tests/data/example3_Y' adding 'skbio/stats/ordination/tests/data/example3_biplot_scaling1' adding 'skbio/stats/ordination/tests/data/example3_biplot_scaling2' adding 'skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1' adding 'skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2' adding 'skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan' adding 'skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan' adding 'skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan' adding 'skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan' adding 'skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site' adding 'skbio/stats/ordination/tests/data/exp_PCoAzeros_site' adding 'skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv' adding 'skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv' adding 'skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv' adding 'skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv' adding 'skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv' adding 'skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv' adding 'skbio/stats/ordination/tests/data/varechem.csv' adding 'skbio/stats/ordination/tests/data/varespec.csv' adding 'skbio/stats/tests/__init__.py' adding 'skbio/stats/tests/test_composition.py' adding 'skbio/stats/tests/test_gradient.py' adding 'skbio/stats/tests/test_misc.py' adding 'skbio/stats/tests/test_power.py' adding 'skbio/stats/tests/test_subsample.py' adding 'skbio/stats/tests/data/cr_data_out' adding 'skbio/stats/tests/data/cr_data_raw' adding 'skbio/stats/tests/data/cr_no_data_out' adding 'skbio/stats/tests/data/cr_no_data_raw' adding 'skbio/stats/tests/data/gr_w_msg_out' adding 'skbio/stats/tests/data/gr_w_msg_raw' adding 'skbio/stats/tests/data/gr_wo_msg_out' adding 'skbio/stats/tests/data/gr_wo_msg_raw' adding 'skbio/stats/tests/data/vr_out' adding 'skbio/stats/tests/data/vr_raw' adding 'skbio/stats/tests/data/vr_real_out' adding 'skbio/stats/tests/data/vr_real_raw' adding 'skbio/tests/__init__.py' adding 'skbio/tests/test_base.py' adding 'skbio/tests/test_workflow.py' adding 'skbio/tree/__init__.py' adding 'skbio/tree/_exception.py' adding 'skbio/tree/_majority_rule.py' adding 'skbio/tree/_nj.py' adding 'skbio/tree/_tree.py' adding 'skbio/tree/tests/__init__.py' adding 'skbio/tree/tests/test_majority_rule.py' adding 'skbio/tree/tests/test_nj.py' adding 'skbio/tree/tests/test_tree.py' adding 'skbio/util/__init__.py' adding 'skbio/util/_decorator.py' adding 'skbio/util/_exception.py' adding 'skbio/util/_misc.py' adding 'skbio/util/_testing.py' adding 'skbio/util/_warning.py' adding 'skbio/util/tests/__init__.py' adding 'skbio/util/tests/test_decorator.py' adding 'skbio/util/tests/test_misc.py' adding 'skbio/util/tests/test_testing.py' adding 'scikit_bio-0.5.6.dist-info/COPYING.txt' adding 'scikit_bio-0.5.6.dist-info/METADATA' adding 'scikit_bio-0.5.6.dist-info/WHEEL' adding 'scikit_bio-0.5.6.dist-info/top_level.txt' adding 'scikit_bio-0.5.6.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Finished executing setuptoolsBuildPhase installing Executing pipInstallPhase /build/scikit-bio-0.5.6/dist /build/scikit-bio-0.5.6 Processing ./scikit_bio-0.5.6-cp38-cp38-linux_x86_64.whl Requirement already satisfied: lockfile>=0.10.2 in /nix/store/5mc0mq9f2671s4lc6pjznx2v2q1c23mm-python3.8-lockfile-0.12.2/lib/python3.8/site-packages (from scikit-bio==0.5.6) (0.12.2) Requirement already satisfied: numpy>=1.9.2 in /nix/store/ghkw0iqrhpz98ipz6c11ikfkh9f1v13v-python3.8-numpy-1.20.3/lib/python3.8/site-packages (from scikit-bio==0.5.6) (1.20.3) Requirement already satisfied: matplotlib>=1.4.3 in /nix/store/1d2533qks2mjridwgyl66rgr1jkgskmi-python3.8-matplotlib-3.4.2/lib/python3.8/site-packages (from scikit-bio==0.5.6) (3.4.2) Requirement already satisfied: decorator>=3.4.2 in /nix/store/jmz9i3xd2l6n3jdhfjncz35b39n3nzwx-python3.8-decorator-4.4.2/lib/python3.8/site-packages (from scikit-bio==0.5.6) (4.4.2) Requirement already satisfied: scikit-learn>=0.19.1 in /nix/store/7k7x34iwgj345lnlis92h8gln264zxxk-python3.8-scikit-learn-0.24.1/lib/python3.8/site-packages (from scikit-bio==0.5.6) (0.24.1) Requirement already satisfied: scipy>=1.3.0 in /nix/store/vlnhamk3jcmhnnnz8dpxhf1q4bn6c67h-python3.8-scipy-1.6.3/lib/python3.8/site-packages (from scikit-bio==0.5.6) (1.6.3) Requirement already satisfied: pandas>=1.0.0 in /nix/store/jwknrx3axyl09h91ddysx0cldcll32xn-python3.8-pandas-1.2.4/lib/python3.8/site-packages (from scikit-bio==0.5.6) (1.2.4) Requirement already satisfied: natsort>=4.0.3 in /nix/store/k5h6k5ascgsaj70yphbv1kwidlsx86qg-python3.8-natsort-7.1.1/lib/python3.8/site-packages (from scikit-bio==0.5.6) (7.1.1) Requirement already satisfied: IPython>=3.2.0 in /nix/store/qikm9qw9scl957h7r6jvjgc9qd8qrnh9-python3.8-ipython-7.24.1/lib/python3.8/site-packages (from scikit-bio==0.5.6) (7.24.1) Requirement already satisfied: hdmedians>=0.13 in /nix/store/w5lr4mr4dzz75whkmcdb94wyjd855wzp-python3.8-hdmedians-0.14.2/lib/python3.8/site-packages (from scikit-bio==0.5.6) (0.14.2) Requirement already satisfied: CacheControl>=0.11.5 in /nix/store/4r9j62h9mibzp6l4vgh0fyai7ki47m0y-python3.8-CacheControl-0.12.6/lib/python3.8/site-packages (from scikit-bio==0.5.6) (0.12.6) Requirement already satisfied: requests in /nix/store/j68ydb2j43yx7ss9gfg2vrv693phgisa-python3.8-requests-2.25.1/lib/python3.8/site-packages (from CacheControl>=0.11.5->scikit-bio==0.5.6) (2.25.1) Requirement already satisfied: msgpack>=0.5.2 in /nix/store/icrxsh4bm74zgmg2hv270y347dazdk2h-python3.8-msgpack-1.0.2/lib/python3.8/site-packages (from CacheControl>=0.11.5->scikit-bio==0.5.6) (1.0.2) Requirement already satisfied: Cython>=0.23 in /nix/store/wli0ffkq25k1araqk0acph90gx4rp0lz-python3.8-Cython-0.29.22/lib/python3.8/site-packages (from hdmedians>=0.13->scikit-bio==0.5.6) (0.29.22) Requirement already satisfied: jedi>=0.16 in /nix/store/8g5czpjp8y5h9z2287i4qaaaqa842m4m-python3.8-jedi-2020-08-06/lib/python3.8/site-packages (from IPython>=3.2.0->scikit-bio==0.5.6) (0.17.2) Requirement already satisfied: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /nix/store/1sr4w2lf9mff28qzwkx2w0qwbsly4a6l-python3.8-prompt-toolkit-3.0.19/lib/python3.8/site-packages (from IPython>=3.2.0->scikit-bio==0.5.6) (3.0.19) Requirement already satisfied: setuptools>=18.5 in /nix/store/qfy6sq5f2pblr3j71cyilqd9xfgbn8n3-python3.8-setuptools-57.2.0/lib/python3.8/site-packages (from IPython>=3.2.0->scikit-bio==0.5.6) (57.2.0.post0) Requirement already satisfied: pexpect>4.3 in /nix/store/c98pj9y2zdpanwny7ka7y1viav5an30c-python3.8-pexpect-4.8.0/lib/python3.8/site-packages (from IPython>=3.2.0->scikit-bio==0.5.6) (4.8.0) Requirement already satisfied: pickleshare in /nix/store/y1bafhh7f99zkig4ran7igm88biakmiv-python3.8-pickleshare-0.7.5/lib/python3.8/site-packages (from IPython>=3.2.0->scikit-bio==0.5.6) (0.7.5) Requirement already satisfied: matplotlib-inline in /nix/store/mxlb903rycgg0iwiafjqdmspmiafsv4h-python3.8-matplotlib-inline-0.1.2/lib/python3.8/site-packages (from IPython>=3.2.0->scikit-bio==0.5.6) (0.1.2) Requirement already satisfied: backcall in /nix/store/6mcri2n3vrj99azyiaivixg919h9j1i2-python3.8-backcall-0.2.0/lib/python3.8/site-packages (from IPython>=3.2.0->scikit-bio==0.5.6) (0.2.0) Requirement already satisfied: traitlets>=4.2 in /nix/store/q7fdcf6qcr6nxzj2hssz4hdfkwbdiqmr-python3.8-traitlets-5.0.5/lib/python3.8/site-packages (from IPython>=3.2.0->scikit-bio==0.5.6) (5.0.5) Requirement already satisfied: pygments in /nix/store/cxi24zaifryqwc797whm5qzd6fcyz2r6-python3.8-Pygments-2.9.0/lib/python3.8/site-packages (from IPython>=3.2.0->scikit-bio==0.5.6) (2.9.0) Requirement already satisfied: parso<0.9.0,>=0.8.0 in /nix/store/bk7wzn59kfic1b92zsx5rldccz29qfmq-python3.8-parso-0.8.1/lib/python3.8/site-packages (from jedi>=0.16->IPython>=3.2.0->scikit-bio==0.5.6) (0.8.1) Requirement already satisfied: python-dateutil>=2.7 in /nix/store/q0h3dbpicys9sd2xcj2qhw382hajah4s-python3.8-python-dateutil-2.8.2/lib/python3.8/site-packages (from matplotlib>=1.4.3->scikit-bio==0.5.6) (2.8.2) Requirement already satisfied: pyparsing>=2.2.1 in /nix/store/92320pl7mv5q06n9681cd4vw7jbfj4da-python3.8-pyparsing-2.4.7/lib/python3.8/site-packages (from matplotlib>=1.4.3->scikit-bio==0.5.6) (2.4.7) Requirement already satisfied: cycler>=0.10 in /nix/store/z9avlvms99kc43c3zmysfx647ql37i7b-python3.8-cycler-0.10.0/lib/python3.8/site-packages (from matplotlib>=1.4.3->scikit-bio==0.5.6) (0.10.0) Requirement already satisfied: kiwisolver>=1.0.1 in /nix/store/l1h2i0hgvs3pfqzcw7s5x77p5iph77m9-python3.8-kiwisolver-1.3.1/lib/python3.8/site-packages (from matplotlib>=1.4.3->scikit-bio==0.5.6) (1.3.1) Requirement already satisfied: pillow>=6.2.0 in /nix/store/zyr87f4bwad0lvjjld7mpliy3njmjxjs-python3.8-Pillow-8.3.1/lib/python3.8/site-packages (from matplotlib>=1.4.3->scikit-bio==0.5.6) (8.3.1) Requirement already satisfied: six in /nix/store/bjljgwz68hbgicn2cfdx3bkxwp05w98j-python3.8-six-1.16.0/lib/python3.8/site-packages (from cycler>=0.10->matplotlib>=1.4.3->scikit-bio==0.5.6) (1.16.0) Requirement already satisfied: pytz>=2017.3 in /nix/store/2j7pcfal735qh08slis14afpf6fbgi88-python3.8-pytz-2021.1/lib/python3.8/site-packages (from pandas>=1.0.0->scikit-bio==0.5.6) (2021.1) Requirement already satisfied: ptyprocess>=0.5 in /nix/store/r3kl71sp2zayznbpqpw1njjjp25b3a52-python3.8-ptyprocess-0.7.0/lib/python3.8/site-packages (from pexpect>4.3->IPython>=3.2.0->scikit-bio==0.5.6) (0.7.0) Requirement already satisfied: wcwidth in /nix/store/jms461q2fkrv4f2pxfqmxschp81sd1aq-python3.8-wcwidth-0.2.5/lib/python3.8/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->IPython>=3.2.0->scikit-bio==0.5.6) (0.2.5) Requirement already satisfied: threadpoolctl>=2.0.0 in /nix/store/0lqk1b8s4w6br73cax21sccfif4lr9xq-python3.8-threadpoolctl-2.2.0/lib/python3.8/site-packages (from scikit-learn>=0.19.1->scikit-bio==0.5.6) (2.2.0) Requirement already satisfied: joblib>=0.11 in /nix/store/by3bykhryvapaj88ng2kn3kx0v91xcz2-python3.8-joblib-1.0.1/lib/python3.8/site-packages (from scikit-learn>=0.19.1->scikit-bio==0.5.6) (1.0.1) Requirement already satisfied: ipython-genutils in /nix/store/1m0r5g5bg2p71jiz920mfx51pcd9b0zj-python3.8-ipython_genutils-0.2.0/lib/python3.8/site-packages (from traitlets>=4.2->IPython>=3.2.0->scikit-bio==0.5.6) (0.2.0) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /nix/store/dhvn8i4fyk20b1cmkrg0yvj9gcfc9ad2-python3.8-urllib3-1.26.6/lib/python3.8/site-packages (from requests->CacheControl>=0.11.5->scikit-bio==0.5.6) (1.26.6) Requirement already satisfied: chardet<5,>=3.0.2 in /nix/store/7x097k92iai0s1nflk7d52d77f5y9w6s-python3.8-chardet-4.0.0/lib/python3.8/site-packages (from requests->CacheControl>=0.11.5->scikit-bio==0.5.6) (4.0.0) Requirement already satisfied: idna>=2.5 in /nix/store/aazgwz802rrrvb9cc8mxs81jj6qdazz5-python3.8-idna-3.2/lib/python3.8/site-packages (from requests->CacheControl>=0.11.5->scikit-bio==0.5.6) (3.2) Requirement already satisfied: certifi>=2017.4.17 in /nix/store/g5x5vm1hi9j48v46i59fkgw09cink5nn-python3.8-certifi-2021.05.30/lib/python3.8/site-packages (from requests->CacheControl>=0.11.5->scikit-bio==0.5.6) (2021.5.30) Installing collected packages: scikit-bio Successfully installed scikit-bio-0.5.6 /build/scikit-bio-0.5.6 Finished executing pipInstallPhase post-installation fixup shrinking RPATHs of ELF executables and libraries in /nix/store/c4wbkga6z8cfzm7s8sfld62zvlx9di5x-python3.8-scikit-bio-0.5.6 shrinking /nix/store/c4wbkga6z8cfzm7s8sfld62zvlx9di5x-python3.8-scikit-bio-0.5.6/lib/python3.8/site-packages/skbio/metadata/_intersection.cpython-38-x86_64-linux-gnu.so shrinking /nix/store/c4wbkga6z8cfzm7s8sfld62zvlx9di5x-python3.8-scikit-bio-0.5.6/lib/python3.8/site-packages/skbio/stats/__subsample.cpython-38-x86_64-linux-gnu.so shrinking /nix/store/c4wbkga6z8cfzm7s8sfld62zvlx9di5x-python3.8-scikit-bio-0.5.6/lib/python3.8/site-packages/skbio/diversity/_phylogenetic.cpython-38-x86_64-linux-gnu.so shrinking /nix/store/c4wbkga6z8cfzm7s8sfld62zvlx9di5x-python3.8-scikit-bio-0.5.6/lib/python3.8/site-packages/skbio/alignment/_ssw_wrapper.cpython-38-x86_64-linux-gnu.so strip is /nix/store/v8imx1nvyz0hgvx9cbcmh6gp4ngw3ffj-binutils-2.35.1/bin/strip stripping (with command strip and flags -S) in /nix/store/c4wbkga6z8cfzm7s8sfld62zvlx9di5x-python3.8-scikit-bio-0.5.6/lib patching script interpreter paths in /nix/store/c4wbkga6z8cfzm7s8sfld62zvlx9di5x-python3.8-scikit-bio-0.5.6 checking for references to /build/ in /nix/store/c4wbkga6z8cfzm7s8sfld62zvlx9di5x-python3.8-scikit-bio-0.5.6... Executing pythonRemoveTestsDir Finished executing pythonRemoveTestsDir pythonCatchConflictsPhase pythonRemoveBinBytecodePhase pythonImportsCheckPhase Executing pythonImportsCheckPhase Check whether the following modules can be imported: skbio