unpacking sources unpacking source archive /nix/store/70w1ghyam4dvxsgy561zmdypfc34isrj-INCHI-1-SRC.zip source root is INCHI-1-SRC setting SOURCE_DATE_EPOCH to timestamp 1608482068 of file INCHI-1-SRC/INCHI_API/libinchi/src/inchi_dll.c patching sources configuring no configure script, doing nothing building build flags: -j2 -l2 SHELL=/nix/store/qfb4j7w2fjjq953nd9xncz5mymj5n0kb-bash-5.1-p8/bin/bash gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichican2.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichicano.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichi_io.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichierr.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichicans.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichiisot.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../libinchi/src/ichilnct.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichimak2.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichimake.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichimap1.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichimap2.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichimap4.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichinorm.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichiparm.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichiprt1.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichiprt2.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichiprt3.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichiqueu.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichiring.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichisort.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichister.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichitaut.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichi_bns.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../libinchi/src/inchi_dll.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichiread.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichirvr1.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichirvr2.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichirvr3.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichirvr4.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichirvr5.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichirvr6.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ichirvr7.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ikey_dll.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/ikey_base26.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../libinchi/src/inchi_dll_main.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../libinchi/src/inchi_dll_a.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../libinchi/src/inchi_dll_a2.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../libinchi/src/inchi_dll_b.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../libinchi/src/ixa/ixa_inchikey_builder.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../libinchi/src/ixa/ixa_read_mol.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../libinchi/src/ixa/ixa_status.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../libinchi/src/ixa/ixa_builder.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../libinchi/src/ixa/ixa_mol.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../libinchi/src/ixa/ixa_read_inchi.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/mol_fmt1.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/mol_fmt2.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/mol_fmt3.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/mol2atom.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/mol_fmt4.c ../../../INCHI_BASE/src/mol_fmt4.c: In function 'OrigAtData_WriteToSDfileAdditionalLines': ../../../INCHI_BASE/src/mol_fmt4.c:1258:35: warning: '%3d' directive writing between 3 and 10 bytes into a region of size 9 [8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat-overflow=-Wformat-overflow=8;;] 1258 | sprintf( entry, " %3d %3d", i + 1, (int) at[i].charge ); | ^~~ ../../../INCHI_BASE/src/mol_fmt4.c:1258:33: note: directive argument in the range [1, 2147483647] 1258 | sprintf( entry, " %3d %3d", i + 1, (int) at[i].charge ); | ^~~~~~~~~~ ../../../INCHI_BASE/src/mol_fmt4.c:1258:33: note: directive argument in the range [-128, 127] In file included from /nix/store/b6v7lwid7nixhac02sz003j4gxp5hl3h-glibc-2.33-50-dev/include/stdio.h:866, from ../../../INCHI_BASE/src/mode.h:38, from ../../../INCHI_BASE/src/mol_fmt4.c:41: /nix/store/b6v7lwid7nixhac02sz003j4gxp5hl3h-glibc-2.33-50-dev/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 9 and 17 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../../../INCHI_BASE/src/mol_fmt4.c:1286:39: warning: '%3d' directive writing between 3 and 10 bytes into a region of size 9 [8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wformat-overflow=-Wformat-overflow=8;;] 1286 | sprintf( entry, " %3d %3d", i + 1, radical ); | ^~~ ../../../INCHI_BASE/src/mol_fmt4.c:1286:37: note: directive argument in the range [1, 2147483647] 1286 | sprintf( entry, " %3d %3d", i + 1, radical ); | ^~~~~~~~~~ ../../../INCHI_BASE/src/mol_fmt4.c:1286:37: note: directive argument in the range [1, 3] In file included from /nix/store/b6v7lwid7nixhac02sz003j4gxp5hl3h-glibc-2.33-50-dev/include/stdio.h:866, from ../../../INCHI_BASE/src/mode.h:38, from ../../../INCHI_BASE/src/mol_fmt4.c:41: /nix/store/b6v7lwid7nixhac02sz003j4gxp5hl3h-glibc-2.33-50-dev/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 9 and 16 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/readinch.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/runichi.c In file included from ../../../INCHI_BASE/src/runichi.c:48: In function 'mark_atoms_to_delete_or_renumber', inlined from 'OAD_StructureEdits_Apply' at ../../../INCHI_BASE/src/runichi.c:2498:16: ../../../INCHI_BASE/src/mode.h:1133:24: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Walloc-size-larger-than=-Walloc-size-larger-than=8;;] 1133 | #define inchi_calloc calloc ../../../INCHI_BASE/src/runichi.c:3086:25: note: in expansion of macro 'inchi_calloc' 3086 | atnums = (int *)inchi_calloc(max_atoms, sizeof(int)); | ^~~~~~~~~~~~ In file included from ../../../INCHI_BASE/src/runichi.c:40: ../../../INCHI_BASE/src/runichi.c: In function 'OAD_StructureEdits_Apply': /nix/store/b6v7lwid7nixhac02sz003j4gxp5hl3h-glibc-2.33-50-dev/include/stdlib.h:542:14: note: in a call to allocation function 'calloc' declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/runichi2.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/runichi3.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/runichi4.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/sha2.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/strutil.c gcc -fPIC -DTARGET_API_LIB -DCOMPILE_ANSI_ONLY -ansi -O3 -c ../../../INCHI_BASE/src/util.c gcc -shared -o ../../bin/Linux/libinchi.so.1.06.00 \ ichican2.o ichicano.o ichi_io.o ichierr.o ichicans.o ichiisot.o ichilnct.o ichimak2.o ichimake.o ichimap1.o ichimap2.o ichimap4.o ichinorm.o ichiparm.o ichiprt1.o ichiprt2.o ichiprt3.o ichiqueu.o ichiring.o ichisort.o ichister.o ichitaut.o ichi_bns.o inchi_dll.o ichiread.o ichirvr1.o ichirvr2.o ichirvr3.o ichirvr4.o ichirvr5.o ichirvr6.o ichirvr7.o ikey_dll.o ikey_base26.o inchi_dll_main.o inchi_dll_a.o inchi_dll_a2.o inchi_dll_b.o ixa_inchikey_builder.o ixa_read_mol.o ixa_status.o ixa_builder.o ixa_mol.o ixa_read_inchi.o mol_fmt1.o mol_fmt2.o mol_fmt3.o mol2atom.o mol_fmt4.o readinch.o runichi.o runichi2.o runichi3.o runichi4.o sha2.o strutil.o util.o -Wl,--version-script=libinchi.map,-z,relro,-soname,libinchi.so.1 -lm ln -fs libinchi.so.1.06.00 \ ../../bin/Linux/libinchi.so.1 installing Archive: /nix/store/2bm7zn1mm4bp7i3dp1dp1cpvhfxrqvp0-INCHI-1-DOC.zip creating: INCHI-1-DOC/ inflating: INCHI-1-DOC/CHANGELOG.pdf inflating: INCHI-1-DOC/External-contributors.pdf inflating: INCHI-1-DOC/InChI_API_Reference.pdf inflating: INCHI-1-DOC/InChI_TechMan.pdf inflating: INCHI-1-DOC/InChI_UserGuide.pdf inflating: INCHI-1-DOC/KNOWNISSUES.pdf inflating: INCHI-1-DOC/LICENCE.pdf inflating: INCHI-1-DOC/readme.txt inflating: INCHI-1-DOC/RelNotes.pdf post-installation fixup shrinking RPATHs of ELF executables and libraries in /nix/store/27isb1m3r5524z16dkb59f6zk16s6rfj-inchi-1.0.6 shrinking /nix/store/27isb1m3r5524z16dkb59f6zk16s6rfj-inchi-1.0.6/lib/libinchi.so.1.06.00 rewriting symlink /nix/store/27isb1m3r5524z16dkb59f6zk16s6rfj-inchi-1.0.6/lib/libinchi.so.1 to be relative to /nix/store/27isb1m3r5524z16dkb59f6zk16s6rfj-inchi-1.0.6 rewriting symlink /nix/store/27isb1m3r5524z16dkb59f6zk16s6rfj-inchi-1.0.6/lib/libinchi.so to be relative to /nix/store/27isb1m3r5524z16dkb59f6zk16s6rfj-inchi-1.0.6 strip is /nix/store/fp2h123793bxln4cjxy0mz08sf4nx2m3-binutils-2.35.1/bin/strip stripping (with command strip and flags -S) in /nix/store/27isb1m3r5524z16dkb59f6zk16s6rfj-inchi-1.0.6/lib patching script interpreter paths in /nix/store/27isb1m3r5524z16dkb59f6zk16s6rfj-inchi-1.0.6 checking for references to /build/ in /nix/store/27isb1m3r5524z16dkb59f6zk16s6rfj-inchi-1.0.6... shrinking RPATHs of ELF executables and libraries in /nix/store/x26xdxn4ffpmjk9592qq7hyiqy13g6ml-inchi-1.0.6-doc strip is /nix/store/fp2h123793bxln4cjxy0mz08sf4nx2m3-binutils-2.35.1/bin/strip patching script interpreter paths in /nix/store/x26xdxn4ffpmjk9592qq7hyiqy13g6ml-inchi-1.0.6-doc checking for references to /build/ in /nix/store/x26xdxn4ffpmjk9592qq7hyiqy13g6ml-inchi-1.0.6-doc...