Sourcing python-remove-tests-dir-hook Sourcing python-catch-conflicts-hook.sh Sourcing python-remove-bin-bytecode-hook.sh Sourcing setuptools-build-hook Using setuptoolsBuildPhase Using setuptoolsShellHook Sourcing pip-install-hook Using pipInstallPhase Sourcing python-imports-check-hook.sh Using pythonImportsCheckPhase Sourcing python-namespaces-hook @nix { "action": "setPhase", "phase": "unpackPhase" } unpacking sources unpacking source archive /nix/store/fpxrlaz21xanxwrlhgc92fv4pnr2img7-netCDF4-1.5.7.tar.gz source root is netCDF4-1.5.7 setting SOURCE_DATE_EPOCH to timestamp 1624298973 of file netCDF4-1.5.7/setup.cfg @nix { "action": "setPhase", "phase": "patchPhase" } patching sources @nix { "action": "setPhase", "phase": "configurePhase" } configuring no configure script, doing nothing @nix { "action": "setPhase", "phase": "buildPhase" } building Executing setuptoolsBuildPhase reading from setup.cfg... checking /nix/store/5sx3bvbcs1hawbl1k6iimsjv7svx6mg8-hdf5-1.12.1-dev/include ... HDF5 library version: 1.12.1 headers found in /nix/store/5sx3bvbcs1hawbl1k6iimsjv7svx6mg8-hdf5-1.12.1-dev/include HDF5 library version: 1.12.1 found in /nix/store/5sx3bvbcs1hawbl1k6iimsjv7svx6mg8-hdf5-1.12.1-dev using netcdf library version b'4.8.0' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib has nc_create_mem function netcdf lib has cdf-5 format capability netcdf lib does not have netcdf4 parallel functions netcdf lib does not have pnetcdf parallel functions running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.8 creating build/lib.linux-x86_64-3.8/netCDF4 copying src/netCDF4/__init__.py -> build/lib.linux-x86_64-3.8/netCDF4 copying src/netCDF4/utils.py -> build/lib.linux-x86_64-3.8/netCDF4 running build_ext cythoning src/netCDF4/_netCDF4.pyx to src/netCDF4/_netCDF4.c /nix/store/r0dqilsxq3m2l1y0gxxl97fka9zq2dla-python3.8-Cython-0.29.24/lib/python3.8/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/netCDF4-1.5.7/src/netCDF4/_netCDF4.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'netCDF4._netCDF4' extension creating build/temp.linux-x86_64-3.8 creating build/temp.linux-x86_64-3.8/src creating build/temp.linux-x86_64-3.8/src/netCDF4 gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5sx3bvbcs1hawbl1k6iimsjv7svx6mg8-hdf5-1.12.1-dev/include -I/nix/store/nwsymvpr15331swncbad0hh1ld85kk19-netcdf-4.8.0/include -I/nix/store/lzfg2l39b5id9fdriska12yh72n4cnx3-libjpeg-turbo-2.1.0-dev/include -I/nix/store/ghcl4rhxf7xgqiw8lf91m85mssp4ppm1-curl-7.76.1-dev/include -I/nix/store/j5qi52a2aaz7kh3h71flnnzynvvj4jbv-python3.8-numpy-1.21.2/lib/python3.8/site-packages/numpy/core/include -Iinclude -I/nix/store/h06ar0py934qsgwfmvixra82ghzvykq4-python3-3.8.11/include/python3.8 -c src/netCDF4/_netCDF4.c -o build/temp.linux-x86_64-3.8/src/netCDF4/_netCDF4.o src/netCDF4/_netCDF4.c: In function ‘__pyx_pf_7netCDF4_8_netCDF4_7_MemBuf_4__dealloc__’: src/netCDF4/_netCDF4.c:4614:20: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdiscarded-qualifiers-Wdiscarded-qualifiers]8;;] 4614 | free(__pyx_v_self->memory); | ~~~~~~~~~~~~^~~~~~~~ In file included from /nix/store/h06ar0py934qsgwfmvixra82ghzvykq4-python3-3.8.11/include/python3.8/Python.h:34, from src/netCDF4/_netCDF4.c:6: /nix/store/f1r94qx7a8m8iz7fxvlq655gbawql7xf-glibc-2.33-50-dev/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const void *’ 565 | extern void free (void *__ptr) __THROW; | ~~~~~~^~~~~ src/netCDF4/_netCDF4.c: In function ‘__pyx_f_7netCDF4_8_netCDF4__set_att’: src/netCDF4/_netCDF4.c:8670:97: warning: passing argument 5 of ‘nc_put_att_string’ from incompatible pointer type []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wincompatible-pointer-types-Wincompatible-pointer-types]8;;] 8670 | __pyx_v_ierr = nc_put_att_string(__pyx_t_6, __pyx_v_varid, __pyx_v_attname, __pyx_t_10, __pyx_v_string_ptrs); | ^~~~~~~~~~~~~~~~~~~ | | | char ** In file included from src/netCDF4/_netCDF4.c:623: /nix/store/nwsymvpr15331swncbad0hh1ld85kk19-netcdf-4.8.0/include/netcdf.h:1047:44: note: expected ‘const char **’ but argument is of type ‘char **’ 1047 | size_t len, const char **op); | ~~~~~~~~~~~~~^~ src/netCDF4/_netCDF4.c:9111:94: warning: passing argument 5 of ‘nc_put_att_string’ from incompatible pointer type []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wincompatible-pointer-types-Wincompatible-pointer-types]8;;] 9111 | __pyx_v_ierr = nc_put_att_string(__pyx_t_14, __pyx_v_varid, __pyx_v_attname, 1, (&__pyx_v_datstring)); | ~^~~~~~~~~~~~~~~~~~~ | | | char ** In file included from src/netCDF4/_netCDF4.c:623: /nix/store/nwsymvpr15331swncbad0hh1ld85kk19-netcdf-4.8.0/include/netcdf.h:1047:44: note: expected ‘const char **’ but argument is of type ‘char **’ 1047 | size_t len, const char **op); | ~~~~~~~~~~~~~^~ src/netCDF4/_netCDF4.c: In function ‘__pyx_f_7netCDF4_8_netCDF4__read_compound’: src/netCDF4/_netCDF4.c:63257:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wsign-compare-Wsign-compare]8;;] 63257 | for (__pyx_v_nf = 0; __pyx_v_nf < __pyx_t_4; __pyx_v_nf++) { | ^ src/netCDF4/_netCDF4.c: In function ‘__pyx_f_7netCDF4_8_netCDF4__read_enum’: src/netCDF4/_netCDF4.c:67040:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wsign-compare-Wsign-compare]8;;] 67040 | for (__pyx_v_nmem = 0; __pyx_v_nmem < __pyx_t_11; __pyx_v_nmem++) { | ^ src/netCDF4/_netCDF4.c: In function ‘__pyx_pymod_exec__netCDF4’: src/netCDF4/_netCDF4.c:86782:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-conversion-Wint-conversion]8;;] 86782 | import_array(); | ^~~~~~~~~~~~ src/netCDF4/_netCDF4.c: In function ‘__pyx_f_7netCDF4_8_netCDF4__get_types’: src/netCDF4/_netCDF4.c:9451:12: warning: ‘__pyx_v_typeids’ may be used uninitialized in this function []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmaybe-uninitialized-Wmaybe-uninitialized]8;;] 9451 | nc_type *__pyx_v_typeids; | ^~~~~~~~~~~~~~~ src/netCDF4/_netCDF4.c: In function ‘__pyx_pw_7netCDF4_8_netCDF4_7Dataset_1__init__’: src/netCDF4/_netCDF4.c:534:40: warning: ‘__pyx_v_ierr’ may be used uninitialized in this function []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmaybe-uninitialized-Wmaybe-uninitialized]8;;] 534 | #define PyInt_FromLong PyLong_FromLong | ^~~~~~~~~~~~~~~ src/netCDF4/_netCDF4.c:13745:7: note: ‘__pyx_v_ierr’ was declared here 13745 | int __pyx_v_ierr; | ^~~~~~~~~~~~ src/netCDF4/_netCDF4.c: In function ‘__pyx_pw_7netCDF4_8_netCDF4_8Variable_1__init__’: src/netCDF4/_netCDF4.c:33607:22: warning: ‘__pyx_v_dimids’ may be used uninitialized in this function []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmaybe-uninitialized-Wmaybe-uninitialized]8;;] 33607 | __pyx_v_ierr = nc_def_var(__pyx_v_self->_grpid, __pyx_v_varname, __pyx_v_xtype, __pyx_v_ndims, __pyx_v_dimids, (&__pyx_v_self->_varid)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/netCDF4/_netCDF4.c:32209:8: note: ‘__pyx_v_dimids’ was declared here 32209 | int *__pyx_v_dimids; | ^~~~~~~~~~~~~~ gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.11/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.6.0.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.4.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.20/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.36.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-6.3p08/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-1.1.1l/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.2.11/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.6.0.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.4.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.2.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.4.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.20/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.36.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-6.3p08/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-1.1.1l/lib build/temp.linux-x86_64-3.8/src/netCDF4/_netCDF4.o -L/nix/store/5sx3bvbcs1hawbl1k6iimsjv7svx6mg8-hdf5-1.12.1-dev/lib -L/nix/store/nwsymvpr15331swncbad0hh1ld85kk19-netcdf-4.8.0/lib -L/nix/store/lzfg2l39b5id9fdriska12yh72n4cnx3-libjpeg-turbo-2.1.0-dev/lib -L/nix/store/ghcl4rhxf7xgqiw8lf91m85mssp4ppm1-curl-7.76.1-dev/lib -L/nix/store/h06ar0py934qsgwfmvixra82ghzvykq4-python3-3.8.11/lib -Wl,--enable-new-dtags,-R/nix/store/5sx3bvbcs1hawbl1k6iimsjv7svx6mg8-hdf5-1.12.1-dev/lib -Wl,--enable-new-dtags,-R/nix/store/nwsymvpr15331swncbad0hh1ld85kk19-netcdf-4.8.0/lib -Wl,--enable-new-dtags,-R/nix/store/lzfg2l39b5id9fdriska12yh72n4cnx3-libjpeg-turbo-2.1.0-dev/lib -Wl,--enable-new-dtags,-R/nix/store/ghcl4rhxf7xgqiw8lf91m85mssp4ppm1-curl-7.76.1-dev/lib -lhdf5_hl -lhdf5 -lnetcdf -lz -ljpeg -lcurl -o build/lib.linux-x86_64-3.8/netCDF4/_netCDF4.cpython-38-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/netCDF4 copying build/lib.linux-x86_64-3.8/netCDF4/__init__.py -> build/bdist.linux-x86_64/wheel/netCDF4 copying build/lib.linux-x86_64-3.8/netCDF4/_netCDF4.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/netCDF4 copying build/lib.linux-x86_64-3.8/netCDF4/utils.py -> build/bdist.linux-x86_64/wheel/netCDF4 running install_egg_info running egg_info writing src/netCDF4.egg-info/PKG-INFO writing dependency_links to src/netCDF4.egg-info/dependency_links.txt writing entry points to src/netCDF4.egg-info/entry_points.txt writing requirements to src/netCDF4.egg-info/requires.txt writing top-level names to src/netCDF4.egg-info/top_level.txt reading manifest file 'src/netCDF4.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/netCDF4.egg-info/SOURCES.txt' Copying src/netCDF4.egg-info to build/bdist.linux-x86_64/wheel/netCDF4-1.5.7-py3.8.egg-info running install_scripts adding license file "LICENSE" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-x86_64/wheel/netCDF4-1.5.7.dist-info/WHEEL creating 'dist/netCDF4-1.5.7-cp38-cp38-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'netCDF4/__init__.py' adding 'netCDF4/_netCDF4.cpython-38-x86_64-linux-gnu.so' adding 'netCDF4/utils.py' adding 'netCDF4-1.5.7.dist-info/LICENSE' adding 'netCDF4-1.5.7.dist-info/METADATA' adding 'netCDF4-1.5.7.dist-info/WHEEL' adding 'netCDF4-1.5.7.dist-info/entry_points.txt' adding 'netCDF4-1.5.7.dist-info/top_level.txt' adding 'netCDF4-1.5.7.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Finished executing setuptoolsBuildPhase @nix { "action": "setPhase", "phase": "installPhase" } installing Executing pipInstallPhase /build/netCDF4-1.5.7/dist /build/netCDF4-1.5.7 Processing ./netCDF4-1.5.7-cp38-cp38-linux_x86_64.whl Requirement already satisfied: cftime in /nix/store/hw0jnshxw2p0zf81ccf6qh3wv3iy8d1d-python3.8-cftime-1.5.0/lib/python3.8/site-packages (from netCDF4==1.5.7) (1.5.0) Requirement already satisfied: numpy>=1.9 in /nix/store/j5qi52a2aaz7kh3h71flnnzynvvj4jbv-python3.8-numpy-1.21.2/lib/python3.8/site-packages (from netCDF4==1.5.7) (1.21.2) Installing collected packages: netCDF4 Successfully installed netCDF4-1.5.7 /build/netCDF4-1.5.7 Finished executing pipInstallPhase @nix { "action": "setPhase", "phase": "fixupPhase" } post-installation fixup shrinking RPATHs of ELF executables and libraries in /nix/store/6iys1s65qhfmwbklix11fn28nc7wk0k8-python3.8-netCDF4-1.5.7 shrinking /nix/store/6iys1s65qhfmwbklix11fn28nc7wk0k8-python3.8-netCDF4-1.5.7/lib/python3.8/site-packages/netCDF4/_netCDF4.cpython-38-x86_64-linux-gnu.so strip is /nix/store/a4mmjm3bblxwp8h53bcfx3dly80ib0ba-binutils-2.35.1/bin/strip stripping (with command strip and flags -S) in /nix/store/6iys1s65qhfmwbklix11fn28nc7wk0k8-python3.8-netCDF4-1.5.7/lib /nix/store/6iys1s65qhfmwbklix11fn28nc7wk0k8-python3.8-netCDF4-1.5.7/bin patching script interpreter paths in /nix/store/6iys1s65qhfmwbklix11fn28nc7wk0k8-python3.8-netCDF4-1.5.7 checking for references to /build/ in /nix/store/6iys1s65qhfmwbklix11fn28nc7wk0k8-python3.8-netCDF4-1.5.7... Rewriting #!/nix/store/h06ar0py934qsgwfmvixra82ghzvykq4-python3-3.8.11/bin/python3.8 to #!/nix/store/h06ar0py934qsgwfmvixra82ghzvykq4-python3-3.8.11 wrapping `/nix/store/6iys1s65qhfmwbklix11fn28nc7wk0k8-python3.8-netCDF4-1.5.7/bin/ncinfo'... Rewriting #!/nix/store/h06ar0py934qsgwfmvixra82ghzvykq4-python3-3.8.11/bin/python3.8 to #!/nix/store/h06ar0py934qsgwfmvixra82ghzvykq4-python3-3.8.11 wrapping `/nix/store/6iys1s65qhfmwbklix11fn28nc7wk0k8-python3.8-netCDF4-1.5.7/bin/nc4tonc3'... Rewriting #!/nix/store/h06ar0py934qsgwfmvixra82ghzvykq4-python3-3.8.11/bin/python3.8 to #!/nix/store/h06ar0py934qsgwfmvixra82ghzvykq4-python3-3.8.11 wrapping `/nix/store/6iys1s65qhfmwbklix11fn28nc7wk0k8-python3.8-netCDF4-1.5.7/bin/nc3tonc4'... Executing pythonRemoveTestsDir Finished executing pythonRemoveTestsDir @nix { "action": "setPhase", "phase": "pythonCatchConflictsPhase" } pythonCatchConflictsPhase @nix { "action": "setPhase", "phase": "pythonRemoveBinBytecodePhase" } pythonRemoveBinBytecodePhase @nix { "action": "setPhase", "phase": "pythonImportsCheckPhase" } pythonImportsCheckPhase Executing pythonImportsCheckPhase